RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 C10orf120Q5SQS8 335 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SLC36A4Q6YBV0 504 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 RABEPKQ7Z6M1 372 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 C12orf40Q86WS4 652 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SYT12Q8IV01 421 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SLC9A9Q8IVB4 645 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 BBS7Q8IWZ6 715 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 CHPFQ8IZ52 775 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 FUKQ8N0W3 1084 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 HDDC3Q8N4P3 179 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 NAT16Q8N8M0 369 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 TERB1Q8NA31 727 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 RLN3Q8WXF3 142 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SPATA32Q96LK8 384 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 BBS2Q9BXC9 721 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 NT5C1AQ9BXI3 368 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 NIF3L1Q9GZT8 377 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SLC32A1Q9H598 525 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SPHK2Q9NRA0 654 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 TMEM30AQ9NV96 361 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 WDR35Q9P2L0 1181 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 SERTAD1Q9UHV2 236 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 DNMT3LQ9UJW3 386 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 PCDHA5Q9Y5H7 936 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 FAM208BQ5VWN6 2430 aa8.19□□□□□ -1.1
VPS50-204ENST00000438395 ZNF638Q14966 1978 aaKnown RBP8.19□□□□□ -1.1
VPS50-204ENST00000438395 KMT2BQ9UMN6 2715 aaPredicted RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 FIGNL2A6NMB9 653 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 TNFRSF10BO14763 440 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 IKBKBO14920 756 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 CYP26A1O43174 497 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 ZNF217O75362 1048 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 KRT37O76014 449 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 ASS1P00966 412 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 HLA-DRAP01903 254 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 RALAP11233 206 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 PFKFB1P16118 471 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 CD58P19256 250 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 ACO1P21399 889 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 BCKDHBP21953 392 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 NR2F2P24468 414 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 PMLP29590 882 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 NTSR1P30989 418 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 RDXP35241 583 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 HOXD12P35452 270 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 KIR2DL1P43626 348 aaPredicted RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 VAMP7P51809 220 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 CLDN10P78369 228 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 KRT85P78386 507 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 SHC2P98077 582 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 RPL6Q02878 288 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 GFPT1Q06210 699 aaPredicted RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 STK4Q13043 487 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 STARD3Q14849 445 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 GAB4Q2WGN9 574 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 SH3PXD2AQ5TCZ1 1133 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 EMC10Q5UCC4 262 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 INTS8Q75QN2 995 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 SV2AQ7L0J3 742 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 RSRC2Q7L4I2 434 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 FAM186BQ8IYM0 893 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 TMEFF1Q8IYR6 380 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 TTC39CQ8N584 583 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 KIAA0895Q8NCT3 520 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 PLEKHO2Q8TD55 490 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 BHMTQ93088 406 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 PAGE5Q96GU1 130 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 CDK5RAP1Q96SZ6 601 aaKnown RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 MMRN2Q9H8L6 949 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 CYP3A43Q9HB55 503 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 ZDHHC4Q9NPG8 344 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 HMGXB4Q9UGU5 601 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 EVLQ9UI08 416 aaPredicted RBP8.18□□□□□ -1.1
VPS50-204ENST00000438395 NAGPAQ9UK23 515 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 NME7Q9Y5B8 376 aa8.18□□□□□ -1.1
VPS50-204ENST00000438395 RALGAPA1Q6GYQ0 2036 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 ZFYVE26Q68DK2 2539 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 A0A1B0GVL5 298 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 PATE3B3GLJ2 98 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 TM4SF5O14894 197 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 CACNG3O60359 315 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 STX10O60499 249 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 NDUFS2O75306 463 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 VNN1O95497 513 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 C4BPAP04003 597 aaKnown RBP8.17□□□□□ -1.1
VPS50-204ENST00000438395 CYBBP04839 570 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 CEACAM1P13688 526 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 TYRP14679 529 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 CMA1P23946 247 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 PSMC2P35998 433 aaKnown RBP8.17□□□□□ -1.1
VPS50-204ENST00000438395 WASP42768 502 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 PTGER3P43115 390 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 SYKP43405 635 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 ASPAP45381 313 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 GCLMP48507 274 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 DLG4P78352 724 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 IRX4P78413 519 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 MESP2Q0VG99 397 aa8.17□□□□□ -1.1
VPS50-204ENST00000438395 E2F5Q15329 346 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms