RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 Q6ZNB5 142 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 HTR3DQ70Z44 454 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.98□□□□□ -0.33
USP40-205ENST00000430158 CNGA4Q8IV77 575 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 DEFB106AQ8N104 65 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 DQX1Q8TE96 717 aaKnown RBP12.98□□□□□ -0.33
USP40-205ENST00000430158 SLC39A13Q96H72 371 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 DDX23Q9BUQ8 820 aaKnown RBP12.98□□□□□ -0.33
USP40-205ENST00000430158 GRPEL1Q9HAV7 217 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 TRPV5Q9NQA5 729 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 OLA1Q9NTK5 396 aaKnown RBP12.98□□□□□ -0.33
USP40-205ENST00000430158 MARCH2Q9P0N8 246 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 CALCOCO1Q9P1Z2 691 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 SFMBT1Q9UHJ3 866 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 DUSP12Q9UNI6 340 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 SORCS3Q9UPU3 1222 aa12.98□□□□□ -0.33
USP40-205ENST00000430158 COL4A3Q01955 1670 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 E2F8A0AVK6 867 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 OTOL1A6NHN0 477 aaPredicted RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 GFRA2O00451 464 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 ZNF263O14978 683 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 CHADO15335 359 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 GRAP2O75791 330 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 GJB6O95452 261 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 FTLP02792 175 aaPredicted RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 CALB1P05937 261 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 SRFP11831 508 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TFE3P19532 575 aaPredicted RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 RRM1P23921 792 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 FLT3P36888 993 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 ZXDAP98168 799 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 MTF1Q14872 753 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TDRD12Q587J7 1177 aaKnown RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 PLEKHA7Q6IQ23 1121 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TOGARAM2Q6ZUX3 1019 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 PHLDB2Q86SQ0 1253 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TADA2BQ86TJ2 420 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TAC4Q86UU9 113 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TMEM139Q8IV31 216 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 C3orf20Q8ND61 904 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 FAM149B1Q96BN6 582 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 P2RY11Q96G91 374 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 ZFYVE19Q96K21 471 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 FCRL2Q96LA5 508 aaPredicted RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 PANX2Q96RD6 677 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 NPY6RQ99463 290 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 TRMT61BQ9BVS5 477 aaKnown RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 LINC00597Q9H2U6 94 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 SYNCQ9H7C4 482 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 HPS4Q9NQG7 708 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 SEPT11Q9NVA2 429 aaKnown RBP12.97□□□□□ -0.33
USP40-205ENST00000430158 CFAP97Q9P2B7 532 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 WDR35Q9P2L0 1181 aa12.97□□□□□ -0.33
USP40-205ENST00000430158 C2CD4BA6NLJ0 364 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 SIGLEC16A6NMB1 481 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 PI4K2BG5E9Z4 385 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 GOLGA8SH3BPF8 625 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 DPYSL4O14531 572 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 MSI1O43347 362 aaKnown RBP12.96□□□□□ -0.33
USP40-205ENST00000430158 TPM1P09493 284 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 NCAM1P13591 858 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 GDI1P31150 447 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 MATKP42679 507 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 RING1Q06587 406 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 NNTQ13423 1086 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 MAMLD1Q13495 774 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 SLC18A3Q16572 532 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 GAB4Q2WGN9 574 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 EML3Q32P44 896 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 ARHGAP29Q52LW3 1261 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 FAM102AQ5T9C2 384 aaPredicted RBP12.96□□□□□ -0.33
USP40-205ENST00000430158 PPP1R2P3Q6NXS1 205 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 RSRC2Q7L4I2 434 aaKnown RBP12.96□□□□□ -0.33
USP40-205ENST00000430158 DDX42Q86XP3 938 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP40-205ENST00000430158 MIB1Q86YT6 1006 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 UBALD2Q8IYN6 164 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 MSANTD4Q8NCY6 345 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 JOSD2Q8TAC2 188 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 RNF139Q8WU17 664 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 OSCP1Q8WVF1 389 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 CHFRQ96EP1 664 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 NHEJ1Q9H9Q4 299 aaPredicted RBP12.96□□□□□ -0.33
USP40-205ENST00000430158 IMPACTQ9P2X3 320 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 RASAL2Q9UJF2 1139 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 STOML2Q9UJZ1 356 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 STRIP2Q9ULQ0 834 aa12.96□□□□□ -0.33
USP40-205ENST00000430158 HBS1LQ9Y450 684 aaKnown RBP12.96□□□□□ -0.33
USP40-205ENST00000430158 ATG2BQ96BY7 2078 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 SLC12A8A0AV02 714 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 GOLGA6L3A6NEY3 463 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 TMCO5BA8MYB1 307 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 IRAK2O43187 625 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 DCXO43602 365 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 ENDOD1O94919 500 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 LCA5LO95447 670 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 TRUB2O95900 331 aaKnown RBP12.95□□□□□ -0.34
USP40-205ENST00000430158 ARSAP15289 507 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 NOS2P35228 1153 aa12.95□□□□□ -0.34
USP40-205ENST00000430158 RFC1P35251 1148 aaPredicted RBP12.95□□□□□ -0.34
USP40-205ENST00000430158 COG7P83436 770 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms