RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PHEXP78562 749 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 CDKL1Q00532 357 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 FAM182AQ5T1J6 154 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 CYP4A22Q5TCH4 519 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 MROH9Q5TGP6 573 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 CAND1Q86VP6 1230 aaKnown RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 SMYD1Q8NB12 490 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 PPP1R14CQ8TAE6 165 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 FAF2Q96CS3 445 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ZDHHC15Q96MV8 337 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 IDI2Q9BXS1 227 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 PICK1Q9NRD5 415 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ANKEF1Q9NU02 776 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ARHGEF38Q9NXL2 777 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 COL20A1Q9P218 1284 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 STK39Q9UEW8 545 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ARHGAP26Q9UNA1 814 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 GNEQ9Y223 722 aaKnown RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 ARID2Q68CP9 1835 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 LRRC37AA6NMS7 1700 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ITGBL1O95965 494 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 PRDX6P30041 224 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ARRB2P32121 409 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 NLRP11P59045 1033 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 RPL10AP62906 217 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 COG7P83436 770 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TKFCQ3LXA3 575 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 C6orf52Q5T4I8 152 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 DHRS4L2Q6PKH6 230 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 Q6ZNX1 250 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 NIPA1Q7RTP0 329 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 AMIGO2Q86SJ2 522 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 RFX6Q8HWS3 928 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ERI1Q8IV48 349 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 RNF168Q8IYW5 571 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 CATSPER1Q8NEC5 780 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ADCY4Q8NFM4 1077 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 XPNPEP1Q9NQW7 623 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 PNPOQ9NVS9 261 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ZNF541Q9H0D2 1346 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 A0A1B0GTW7 788 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 FAM159BA6NKW6 160 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 SUPT3HO75486 399 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 COX4I1P13073 169 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ABCD1P33897 745 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ROR1Q01973 937 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 STXBP5Q5T5C0 1151 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 VWA5B1Q5TIE3 1220 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 WDR78Q5VTH9 848 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 SCARA3Q6AZY7 606 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TRMT10BQ6PF06 316 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 UNC5AQ6ZN44 842 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TIFABQ6ZNK6 161 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 LILRA2Q8N149 483 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TMEM35BQ8NCS4 154 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 LRGUKQ96M69 825 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 RTKNQ9BST9 563 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 IFT122Q9HBG6 1241 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 RAB6BQ9NRW1 208 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 RSL24D1Q9UHA3 163 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 ZNHIT2Q9UHR6 403 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 SYNPO2Q9UMS6 1093 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TDRKHQ9Y2W6 561 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 SLC15A5A6NIM6 579 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 ZBTB14O43829 449 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 SERPINB2P05120 415 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 OSBPP22059 807 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 CDH5P33151 784 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 ACOT2P49753 483 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 HSD17B4P51659 736 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 NOMO1Q15155 1222 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 C16orf46Q6P387 395 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 NPNTQ6UXI9 565 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 CMASQ8NFW8 434 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 JOSD2Q8TAC2 188 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TRIM56Q9BRZ2 755 aaKnown RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 FRMD8Q9BZ67 464 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 DEFB129Q9H1M3 183 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 FAM96AQ9H5X1 160 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 TUBGCP4Q9UGJ1 667 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 HEMK1Q9Y5R4 338 aaPredicted RBP11.05□□□□□ -0.64
USP54-204ENST00000422491 UBIAD1Q9Y5Z9 338 aa11.05□□□□□ -0.64
USP54-204ENST00000422491 SH3PXD2BA1X283 911 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 BOLA2-SMG1P6H3BVE0 249 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 DCXO43602 365 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 STAM2O75886 525 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 SERPINE1P05121 402 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 ZNF23P17027 643 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 KCNA4P22459 653 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 CDK9P50750 372 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 MRPS9P82933 396 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 PCLAFQ15004 111 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 TAF5Q15542 800 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 HADHQ16836 314 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 GPAT2Q6NUI2 795 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 DARS2Q6PI48 645 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 POTEHQ6S545 545 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 CROCCP3Q8IVE0 287 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 KBTBD7Q8WVZ9 684 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 BIRC8Q96P09 236 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms