RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NMUR1Q9HB89 426 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 SMARCAL1Q9NZC9 954 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 AP4E1Q9UPM8 1137 aa17.82■□□□□ 0.44
CCDC28B-202ENST00000421922 KRIT1O00522 736 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 ENDOD1O94919 500 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 C1RP00736 705 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 CLCN4P51793 760 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 ATXN1P54253 815 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 PITX1P78337 314 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 PDK2Q15119 407 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 ATP13A4Q4VNC1 1196 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 TXNRD3NBQ6F5E7 133 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 LILRA6Q6PI73 481 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 SPOCD1Q6ZMY3 1216 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 RTL10Q7L3V2 364 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 GDPD5Q8WTR4 605 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 MAK16Q9BXY0 300 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 OSBPL8Q9BZF1 889 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 DHX35Q9H5Z1 703 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 MAN1C1Q9NR34 630 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 PIGVQ9NUD9 493 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 RASAL2Q9UJF2 1139 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 KDELR1P24390 212 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 TUBB4BP68371 445 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 EFEMP1Q12805 493 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 RAB6CQ53S08 254 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 TFDP3Q5H9I0 405 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 TEX35Q5T0J7 233 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 OTUD1Q5VV17 481 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 AADACL2Q6P093 401 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 MSANTD2Q6P1R3 559 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 ADAT2Q7Z6V5 191 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 DNAJB7Q7Z6W7 309 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 SLC13A5Q86YT5 568 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 PSTKQ8IV42 348 aaKnown RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 MYRFLQ96LU7 910 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 RAB6CQ9H0N0 254 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 WDCPQ9H6R7 721 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 GPATCH2LQ9NWQ4 482 aa17.81■□□□□ 0.44
CCDC28B-202ENST00000421922 COL4A4P53420 1690 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 CCDC188H7C350 402 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 PDE2AO00408 941 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 IRAK2O43187 625 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 TLR5O60602 858 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 CLASP2O75122 1294 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 TJP3O95049 919 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 SLC2A3P11169 496 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 HMGA1P17096 107 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 CCR1P32246 355 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 ARL4AP40617 200 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 SMAD3P84022 425 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 C2orf54Q08AI8 447 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 PPP2R5EQ16537 467 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 PABPC1LQ4VXU2 614 aaKnown RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 PPP6R3Q5H9R7 873 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 BRMS1LQ5PSV4 323 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 HECTD3Q5T447 861 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 KAZNQ674X7 775 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 MFSD7Q6UXD7 560 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 ZNF572Q7Z3I7 529 aaPredicted RBP17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 CCDC185Q8N715 623 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 SPATA4Q8NEY3 305 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 MYRIPQ8NFW9 859 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 RAPGEF5Q92565 580 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 CASP10Q92851 521 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 NTAN1Q96AB6 310 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 TLE6Q9H808 572 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 ASAH2Q9NR71 780 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 OSER1Q9NX31 292 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 SFMBT1Q9UHJ3 866 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 NUDT5Q9UKK9 219 aa17.8■□□□□ 0.44
CCDC28B-202ENST00000421922 EFCAB8A8MWE9 144 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 XYLBO75191 536 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 APOEP02649 317 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 ZDHHC11BP0C7U3 371 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 PTPN7P35236 360 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 CXCR3P49682 368 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 KPNA1P52294 538 aaPredicted RBP17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 TBX4P57082 545 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 ITIH3Q06033 890 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 CAMK1Q14012 370 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 TFDP2Q14188 446 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 LLGL1Q15334 1064 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 ZC3H12AQ5D1E8 599 aaKnown RBP17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 Q7L0L9 218 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 BNIPLQ7Z465 357 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 RFX6Q8HWS3 928 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 CMASQ8NFW8 434 aaPredicted RBP17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 HDAC7Q8WUI4 952 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 UBXN4Q92575 508 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 HEMGNQ9BXL5 484 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 AP1M1Q9BXS5 423 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 ADAM33Q9BZ11 813 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 MARCH2Q9P0N8 246 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 SLC12A6Q9UHW9 1150 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 FZD10Q9ULW2 581 aa17.79■□□□□ 0.44
CCDC28B-202ENST00000421922 hCG_1818297A0A087WSY0 165 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 H3BRJ5 948 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms