RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ARHGAP33O14559 1287 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 CACNG3O60359 315 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 OPHN1O60890 802 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 PHACTR2O75167 634 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 C4BPAP04003 597 aaKnown RBP13.61□□□□□ -0.23
LINC00339-202ENST00000416769 CISD3P0C7P0 127 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 TUBP50607 506 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 NDST1P52848 882 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 NCOA4Q13772 614 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 LRSAM1Q6UWE0 723 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA1324Q6UXG2 1013 aaKnown RBP13.61□□□□□ -0.23
LINC00339-202ENST00000416769 STXBP4Q6ZWJ1 553 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 RAB44Q7Z6P3 723 aaPredicted RBP13.61□□□□□ -0.23
LINC00339-202ENST00000416769 HDDC3Q8N4P3 179 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 OVCA2Q8WZ82 227 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 ERCC4Q92889 916 aaPredicted RBP13.61□□□□□ -0.23
LINC00339-202ENST00000416769 OTUB2Q96DC9 234 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 SMARCD1Q96GM5 515 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 GABRG3Q99928 467 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 NACA2Q9H009 215 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 EXOC1Q9NV70 894 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 CLEC4EQ9ULY5 219 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 ASXL3Q9C0F0 2248 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 ITPR1Q14643 2758 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 PTPRBP23467 1997 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 A0A1W2PQH9 124 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 UPK3BL1B0FP48 263 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 UPK3BL2E5RIL1 263 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 EXOC3O60645 756 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 KLKB1P03952 638 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 ASPAP45381 313 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 BNC1Q01954 994 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 SCAPQ12770 1279 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 PLEKHG6Q3KR16 790 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 ZNF667Q5HYK9 610 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 SPDYCQ5MJ68 293 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 C1orf220Q5T0J3 134 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 HTR3DQ70Z44 454 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 PARD3BQ8TEW8 1205 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 MAN1B1Q9UKM7 699 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 STARD13Q9Y3M8 1113 aa13.6□□□□□ -0.23
LINC00339-202ENST00000416769 KCNJ18B7U540 433 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 FAM163BP0C2L3 166 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 ATICP31939 592 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 GRIK2Q13002 908 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 BYSLQ13895 437 aaKnown RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 MORC3Q14149 939 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 GEN1Q17RS7 908 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 BMT2Q1RMZ1 405 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 FUT11Q495W5 492 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 ZNF658Q5TYW1 1059 aaPredicted RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 SLC36A4Q6YBV0 504 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 Q6ZNB5 142 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 CLEC20AQ6ZU45 233 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 SCD5Q86SK9 330 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 SLCO6A1Q86UG4 719 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 RGL4Q8IZJ4 473 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 ZCCHC9Q8N567 271 aaKnown RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA0895Q8NCT3 520 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 SORCS1Q8WY21 1168 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 MKRN2Q9H000 416 aaKnown RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 VRTNQ9H8Y1 702 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 APOBEC3GQ9HC16 384 aaKnown RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 CSNK1G1Q9HCP0 422 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 DNAAF2Q9NVR5 837 aaKnown RBP13.59□□□□□ -0.23
LINC00339-202ENST00000416769 MARK1Q9P0L2 795 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 ATP8B3O60423 1300 aa13.59□□□□□ -0.23
LINC00339-202ENST00000416769 CKAP5Q14008 2032 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 FTH1P19P0C7X4 201 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 HOXD12P35452 270 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 IL12RB1P42701 662 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 DGKGP49619 791 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 STK4Q13043 487 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 TRIP6Q15654 476 aaKnown RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 KNOP1Q1ED39 458 aaKnown RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 COBLL1Q53SF7 1204 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 TRMT11Q7Z4G4 463 aaKnown RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 PROSER1Q86XN7 944 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 NAXDQ8IW45 347 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 C12orf56Q8IXR9 622 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 CEP76Q8TAP6 659 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 MDM1Q8TC05 714 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 TOE1Q96GM8 510 aaKnown RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF419Q96HQ0 510 aaPredicted RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 CYLDQ9NQC7 956 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 FNDC3AQ9Y2H6 1198 aaKnown RBP13.58□□□□□ -0.24
LINC00339-202ENST00000416769 STON1Q9Y6Q2 735 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 UBE4BO95155 1302 aa13.58□□□□□ -0.24
LINC00339-202ENST00000416769 TMEM131Q92545 1883 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 STC2O76061 302 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 KIF20AO95235 890 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 HMBSP08397 361 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 RARGP13631 454 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 ACO1P21399 889 aaKnown RBP13.57□□□□□ -0.24
LINC00339-202ENST00000416769 PRKCHP24723 683 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 PPP1R2P41236 205 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 CLDN10P78369 228 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 ISM2Q6H9L7 571 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 SASS6Q6UVJ0 657 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 LAYNQ6UX15 382 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms