RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TPRP12270 2363 aaKnown RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 SLC12A8A0AV02 714 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 TRIM49BA6NDI0 452 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 C1QTNF9BB2RNN3 333 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 CALCAP01258 141 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 C1QTNF9P0C862 333 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 EPB41P11171 864 aaKnown RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 RALAP11233 206 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 TRIM21P19474 475 aaKnown RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 GOLGA7BQ2TAP0 167 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 PREPLQ4J6C6 727 aaPredicted RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 FYB2Q5VWT5 728 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 ISM2Q6H9L7 571 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 SDE2Q6IQ49 451 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 CACUL1Q86Y37 369 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 DENND1CQ8IV53 801 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 FBXL13Q8NEE6 735 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 UBA3Q8TBC4 463 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 SORCS1Q8WY21 1168 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 SCAND2PQ9GZW5 306 aaPredicted RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 PNPLA8Q9NP80 782 aa12.15□□□□□ -0.46
USP4-204ENST00000416417 EVLQ9UI08 416 aaPredicted RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 AGO1Q9UL18 857 aaKnown RBP12.15□□□□□ -0.46
USP4-204ENST00000416417 TNRC6BQ9UPQ9 1833 aaKnown RBP12.14□□□□□ -0.47
USP4-204ENST00000416417 SPAARA0A1B0GVQ0 90 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 CETN3O15182 167 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 AP5Z1O43299 807 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 TSPAN3O60637 253 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 MAOBP27338 520 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 TKTL1P51854 596 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 YWHAGP61981 247 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP4-204ENST00000416417 ZNF33AQ06730 810 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 BYSLQ13895 437 aaKnown RBP12.14□□□□□ -0.47
USP4-204ENST00000416417 EDRF1Q3B7T1 1238 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 ANKRD40Q6AI12 368 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 KLHDC10Q6PID8 442 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 RSRC2Q7L4I2 434 aaKnown RBP12.14□□□□□ -0.47
USP4-204ENST00000416417 BHLHA9Q7RTU4 235 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 TRIML1Q8N9V2 468 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 KCNV2Q8TDN2 545 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 MRGPRX1Q96LB2 322 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 HSPA12BQ96MM6 686 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 GABRG3Q99928 467 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 ULBP1Q9BZM6 244 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 MARCH2Q9P0N8 246 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 STON1Q9Y6Q2 735 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 MAP1BP46821 2468 aaKnown RBP12.14□□□□□ -0.47
USP4-204ENST00000416417 ZFHX4Q86UP3 3567 aa12.14□□□□□ -0.47
USP4-204ENST00000416417 CNOT1A5YKK6 2376 aaKnown RBP12.13□□□□□ -0.47
USP4-204ENST00000416417 PIK3R2O00459 728 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 PENKP01210 267 aaPredicted RBP12.13□□□□□ -0.47
USP4-204ENST00000416417 GTF2H1P32780 548 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 IL12RB1P42701 662 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 MFAP3P55082 362 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 SHC2P98077 582 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 PDE4CQ08493 712 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 LMAN2Q12907 356 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 FUT11Q495W5 492 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 RAB41Q5JT25 222 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
USP4-204ENST00000416417 EDEM1Q92611 657 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 CLIC5Q9NZA1 410 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 SFMBT1Q9UHJ3 866 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 FBXO10Q9UK96 956 aa12.13□□□□□ -0.47
USP4-204ENST00000416417 MYO18AQ92614 2054 aaKnown RBP12.12□□□□□ -0.47
USP4-204ENST00000416417 ZBTB24O43167 697 aaPredicted RBP12.12□□□□□ -0.47
USP4-204ENST00000416417 CD19P15391 556 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 PSEN1P49768 467 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 FAM193AP78312 1265 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 COG7P83436 770 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 ARHGAP17Q68EM7 881 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 SLC23A3Q6PIS1 610 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 SLC36A4Q6YBV0 504 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 TADA2BQ86TJ2 420 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 RGL4Q8IZJ4 473 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 ANKRD52Q8NB46 1076 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 TSPAN16Q9UKR8 245 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 SLC6A14Q9UN76 642 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 WASF3Q9UPY6 502 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 ADAMTS9Q9P2N4 1935 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 CACNA1BQ00975 2339 aa12.12□□□□□ -0.47
USP4-204ENST00000416417 KCNJ18B7U540 433 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 MSI1O43347 362 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 NDUFS2O75306 463 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZBED1O96006 694 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 CEACAM1P13688 526 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 LCP1P13796 627 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 CSRP1P21291 193 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 PRKCHP24723 683 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 RGS7P49802 495 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ATXN3P54252 364 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 MCCD1P59942 119 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 GFPT1Q06210 699 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 ENPEPQ07075 957 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ADIGQ0VDE8 80 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 CUL2Q13617 745 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 DUOXA1Q1HG43 343 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF658Q5TYW1 1059 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 PEAR1Q5VY43 1037 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms