RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 STX3Q13277 289 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PKN2Q16513 984 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 SH3D19Q5HYK7 790 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ANKRD23Q86SG2 305 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PHF13Q86YI8 300 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PPHLN1Q8NEY8 458 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 NPLOC4Q8TAT6 608 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 SEPT8Q92599 483 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 TTC1Q99614 292 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 NT5MQ9NPB1 228 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 RBM22Q9NW64 420 aaKnown RBP eCLIP11.54□□□□□ -0.562e-6■■■□□ 18.7
PTPRF-204ENST00000412568 PCYOX1Q9UHG3 505 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ZNF112Q9UJU3 913 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 VANGL2Q9ULK5 521 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 SPECC1L-ADORA2AF8WAN1 911 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 MAP3K7O43318 606 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 EDIL3O43854 480 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 KPNA6O60684 536 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 F9P00740 461 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ENO1P06733 434 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PYGBP11216 843 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 GRM5P41594 1212 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ATXN3P54252 364 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ARHGAP1Q07960 439 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 CHI3L2Q15782 390 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 TTC30BQ8N4P2 665 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 SCG3Q8WXD2 468 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 YME1L1Q96TA2 773 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 LGMNQ99538 433 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 DPEP3Q9H4B8 488 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 TMEM191CA6NGB0 347 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 AVILO75366 819 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 CD48P09326 243 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 GOT1P17174 413 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 NPR3P17342 541 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 AXLP30530 894 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 BFSP2Q13515 415 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 GRAMD1BQ3KR37 738 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PMF1Q6P1K2 205 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 TMEM130Q8N3G9 435 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 RIBC1Q8N443 379 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 PGM2Q96G03 612 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 TBCBQ99426 244 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 RNF39Q9H2S5 420 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ARHGEF38Q9NXL2 777 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 RNF103O00237 685 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 IGF2BP3O00425 579 aaKnown RBP eCLIP11.53□□□□□ -0.568e-14■■■□□ 15.7
PTPRF-204ENST00000412568 GFAPP14136 432 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 TAC1P20366 129 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 LMO2P25791 158 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 SCTRP47872 440 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CRYBB1P53674 252 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 KCNA10Q16322 511 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 DBN1Q16643 649 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 TMC7Q7Z402 723 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 PIP4K2CQ8TBX8 421 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 OSBPL1AQ9BXW6 950 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 Q9H521 79 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 DMAP1Q9NPF5 467 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 BCAP29Q9UHQ4 241 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 APOC4-APOC2K7ER74 178 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 APOC2P02655 101 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 RPL22P35268 128 aaKnown RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 TUBP50607 506 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 ZNF143P52747 638 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 RAD23BP54727 409 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 FKBP1BP68106 108 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CRHR2Q13324 411 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 DDR2Q16832 855 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 C9orf57Q5W0N0 161 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 ZNF280DQ6N043 979 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 FRA10AC1Q70Z53 315 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 UNC45BQ8IWX7 931 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 RASGEF1CQ8N431 466 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 HTR3CQ8WXA8 447 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 SMARCD1Q96GM5 515 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 FAM161BQ96MY7 647 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 EGFL8Q99944 293 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CD248Q9HCU0 757 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CHST12Q9NRB3 414 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 MID2Q9UJV3 735 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 PHTF1Q9UMS5 762 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 SDR42E2A6NKP2 422 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 DPYSL3Q14195 570 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 NFE2Q16621 373 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 SH3PXD2AQ5TCZ1 1133 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 ERLEC1Q96DZ1 483 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 POPDC2Q9HBU9 364 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 XAB2Q9HCS7 855 aaKnown RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 PADI3Q9ULW8 664 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 MYH3P11055 1940 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 H0Y626 953 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CBX4O00257 560 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 PPEF2O14830 753 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 HCRTO43612 131 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 LIASO43766 372 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 UBOX5O94941 541 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 TRUB2O95900 331 aaKnown RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 MGAT1P26572 445 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms