RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TMEM132CQ8N3T6 1108 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 DGCR14Q96DF8 476 aaKnown RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 TCF7L2Q9NQB0 619 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 CNTNAP4Q9C0A0 1308 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 SLIT1O75093 1534 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 ADCY6O43306 1168 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 NPM3O75607 178 aaKnown RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 KRT34O76011 436 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 GLP2RO95838 553 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 CYP2D6P10635 497 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 LRRC74AQ0VAA2 488 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 BST2Q10589 180 aaKnown RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 FRG1Q14331 258 aaKnown RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 CLEC16AQ2KHT3 1053 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 INO80DQ53TQ3 878 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 KCNT1Q5JUK3 1230 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 SYNE4Q8N205 404 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 AMER2Q8N7J2 671 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 PDPRQ8NCN5 879 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 DNERQ8NFT8 737 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 STK32AQ8WU08 396 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 GLMNQ92990 594 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 RNFT2Q96EX2 444 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 KCTD14Q9BQ13 255 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 FBXO44Q9H4M3 255 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 MROH8Q9H579 483 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 WDCPQ9H6R7 721 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 AGPAT5Q9NUQ2 364 aa6.27□□□□□ -1.41
SCN1A-203ENST00000409050 AFF4Q9UHB7 1163 aaKnown RBP6.27□□□□□ -1.41
SCN1A-203ENST00000409050 NPHP3-ACAD11A0A0J9YXS1 232 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MGAT4DA6NG13 374 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 F8VZ95 297 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 IFRD1O00458 451 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PHGDHO43175 533 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RNASEH1O60930 286 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 FYNP06241 537 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MMP10P09238 476 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CLTBP09497 229 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CCDC130P13994 396 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PON1P27169 355 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PTPN7P35236 360 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 GCLCP48506 637 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SPP2Q13103 211 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PEX6Q13608 980 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CASP12Q6UXS9 341 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZPBP2Q6X784 338 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 NEK10Q6ZWH5 1172 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 LPCAT2Q7L5N7 544 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ITIH5Q86UX2 942 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 GALNT4Q8N4A0 578 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 FBXO36Q8NEA4 188 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ATP8B4Q8TF62 1192 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ATL1Q8WXF7 558 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DCLK3Q9C098 648 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SPASTQ9UBP0 616 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RPS6KA6Q9UK32 745 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PRR12Q9ULL5 1215 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 C15orf41Q9Y2V0 281 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DAGLAQ9Y4D2 1042 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CYP27B1O15528 508 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 BNIP3LO60238 219 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MTRF1O75570 445 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SEMA3DO95025 777 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CETPP11597 493 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CXCR2P25025 360 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 AIF1P55008 147 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PSMD4P55036 377 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 COPZ1P61923 177 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PSMC6P62333 389 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RRP1BQ14684 758 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PPP1R15BQ5SWA1 713 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PDZK1Q5T2W1 519 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TTI2Q6NXR4 508 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PEG10Q86TG7 708 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ARHGEF19Q8IW93 802 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SH2D3CQ8N5H7 860 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 DHRSXQ8N5I4 330 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SLC16A10Q8TF71 515 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CPA5Q8WXQ8 436 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 AP3S1Q92572 193 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 FAM111AQ96PZ2 611 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM120AQ9BXJ8 343 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RIBC2Q9H4K1 309 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 GDF3Q9NR23 364 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 EVA1BQ9NVM1 165 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PHF11Q9UIL8 331 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PRPF19Q9UMS4 504 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CRYL1Q9Y2S2 319 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 TEX28O15482 410 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF862O60290 1169 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MED24O75448 989 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SUPT7LO94864 414 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF7P17097 686 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 MYL12AP19105 171 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SOAT1P35610 550 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 CHI3L1P36222 383 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 PPP3CCP48454 512 aa6.26□□□□□ -1.41
SCN1A-203ENST00000409050 SARSP49591 514 aaKnown RBP6.26□□□□□ -1.41
SCN1A-203ENST00000409050 RPS6KA3P51812 740 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms