RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 C2CD2Q9Y426 696 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 PDHXO00330 501 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 TRDMT1O14717 391 aaKnown RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 PSMD3O43242 534 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 RALBP11234 206 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 ENO3P13929 434 aaPredicted RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 TMEM154Q6P9G4 183 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 VSTM1Q6UX27 236 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 PABPC5Q96DU9 382 aaKnown RBP19.12■□□□□ 0.65
USP48-204ENST00000400301 BTBD10Q9BSF8 475 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 SAR1AQ9NR31 198 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 UBP1Q9NZI7 540 aa19.12■□□□□ 0.65
USP48-204ENST00000400301 PMPCBO75439 489 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 KCNA4P22459 653 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 EPHX2P34913 555 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 CDK16Q00536 496 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 FNIP1Q8TF40 1166 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 SGF29Q96ES7 293 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 RMDN2Q96LZ7 410 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 NRDE2Q9H7Z3 1164 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 SLC17A7Q9P2U7 560 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 MYLK4Q86YV6 388 aaPredicted RBP19.11■□□□□ 0.65
USP48-204ENST00000400301 SCUBE1Q8IWY4 988 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 KCNK16Q96T55 309 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 UPF3AQ9H1J1 476 aaKnown RBP19.11■□□□□ 0.65
USP48-204ENST00000400301 CILPO75339 1184 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 CRADDP78560 199 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 PPP1R26Q5T8A7 1209 aaPredicted RBP19.11■□□□□ 0.65
USP48-204ENST00000400301 TXNRD3NBQ6F5E7 133 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 ECHDC2Q86YB7 292 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 INPP5DQ92835 1189 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 APBB2Q92870 758 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 ELMO2Q96JJ3 720 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 RNPEPQ9H4A4 650 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 LRFN2Q9ULH4 789 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 C17orf102A2RUQ5 167 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 GTF2A2P52657 109 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 SLC12A1Q13621 1099 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 WASHC2DQ5SRD0 308 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 C16orf46Q6P387 395 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 STRA6Q9BX79 667 aa19.11■□□□□ 0.65
USP48-204ENST00000400301 CPA3P15088 417 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TRIP10Q15642 601 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 FNBP1LQ5T0N5 605 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 STKLD1Q8NE28 680 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 ZNF317Q96PQ6 595 aaPredicted RBP19.1■□□□□ 0.65
USP48-204ENST00000400301 CENPKQ9BS16 269 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 SPON2Q9BUD6 331 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 C12orf65Q9H3J6 166 aaKnown RBP19.1■□□□□ 0.65
USP48-204ENST00000400301 ABHD16BQ9H3Z7 469 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TAGLN3Q9UI15 199 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 STRNO43815 780 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 USP12O75317 370 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 PIGRP01833 764 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 CPT1AP50416 773 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 NOMO1Q15155 1222 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TBCCQ15814 346 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 KRT80Q6KB66 452 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 CRELD2Q6UXH1 353 aaPredicted RBP19.1■□□□□ 0.65
USP48-204ENST00000400301 ARHGEF38Q9NXL2 777 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 DLGAP2Q9P1A6 1054 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 MSCO60682 206 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TSHRP16473 764 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 KCNA3P22001 575 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 ITGA9Q13797 1035 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TCEAL1Q15170 157 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 TAF5Q15542 800 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 HSP90AA5PQ58FG0 334 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 C4orf50Q6ZRC1 276 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 SLC25A41Q8N5S1 370 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 ICA1LQ8NDH6 482 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 EDEM1Q92611 657 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 B3GNT5Q9BYG0 378 aa19.1■□□□□ 0.65
USP48-204ENST00000400301 FAM237BA0A1B0GVD1 139 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 USP2O75604 605 aaPredicted RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 F9P00740 461 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 MRPS35P82673 323 aaKnown RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 SWT1Q5T5J6 900 aaKnown RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 IARS2Q9NSE4 1012 aaKnown RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 DDX43Q9NXZ2 648 aaKnown RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 DGKIO75912 1065 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 GRK2P25098 689 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 MLH1P40692 756 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 GLRBP48167 497 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 SERPINB8P50452 374 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 MPP3Q13368 585 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 KIAA1841Q6NSI8 718 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 DRICH1Q6PGQ1 229 aaPredicted RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 B3GNT9Q6UX72 402 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 UNC93AQ86WB7 457 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 SLC4A11Q8NBS3 891 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP48-204ENST00000400301 ILKAPQ9H0C8 392 aaPredicted RBP19.09■□□□□ 0.65
USP48-204ENST00000400301 PCDH18Q9HCL0 1135 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 VCX3AQ9NNX9 186 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 PTPRJQ12913 1337 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 NFKBIEO00221 500 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 PRPF4O43172 522 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP48-204ENST00000400301 GP5P40197 560 aa19.09■□□□□ 0.65
USP48-204ENST00000400301 ATXN3P54252 364 aaPredicted RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms