RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 C4orf33Q8N1A6 199 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 EDEM1Q92611 657 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 SEC16BQ96JE7 1060 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 NPY6RQ99463 290 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 LGMNQ99538 433 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 TRIM56Q9BRZ2 755 aaKnown RBP15.64■□□□□ 0.09
GPC3-202ENST00000394299 CEP41Q9BYV8 373 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 TRPV6Q9H1D0 765 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 DTLQ9NZJ0 730 aa15.64■□□□□ 0.09
GPC3-202ENST00000394299 A0A0U1RQF3 1178 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 B4GALT3O60512 393 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 VIMP08670 466 aaKnown RBP15.63■□□□□ 0.09
GPC3-202ENST00000394299 SCNN1AP37088 669 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 LHX1P48742 406 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 RTN4RL1Q86UN2 441 aaPredicted RBP15.63■□□□□ 0.09
GPC3-202ENST00000394299 LRRTM3Q86VH5 581 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 PDIK1LQ8N165 341 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 SLC7A14Q8TBB6 771 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 DYDC1Q8WWB3 177 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 KCTD13Q8WZ19 329 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 USP3Q9Y6I4 520 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 SRRM3A6NNA2 597 aaPredicted RBP15.63■□□□□ 0.09
GPC3-202ENST00000394299 E7ESA3 106 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 APRTP07741 180 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 BDNFP23560 247 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 NOS2P35228 1153 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 GRIA1P42261 906 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 NKX3-2P78367 333 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 TRIM71Q2Q1W2 868 aaKnown RBP15.63■□□□□ 0.09
GPC3-202ENST00000394299 RPAINQ86UA6 219 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 CD99L2Q8TCZ2 262 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 NT5C3BQ969T7 300 aa15.63■□□□□ 0.09
GPC3-202ENST00000394299 BCLAF3A2AJT9 711 aaKnown RBP15.62■□□□□ 0.09
GPC3-202ENST00000394299 ZNF623O75123 536 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 DAB1O75553 588 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 TRPA1O75762 1119 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 KRT15P19012 456 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 RNASELQ05823 741 aaKnown RBP15.62■□□□□ 0.09
GPC3-202ENST00000394299 DEUP1Q05D60 604 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 CEP128Q6ZU80 1094 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 TADA2BQ86TJ2 420 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 TRABD2AQ86V40 505 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 MYLPFQ96A32 169 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 POPDC2Q9HBU9 364 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 SNX10Q9Y5X0 201 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 HHLA1C9JL84 531 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 CAPN9O14815 690 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 NCAM1P13591 858 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 VAV1P15498 845 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 ATP5DP30049 168 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 ACLYP53396 1101 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 DAOAP59103 153 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 TMEM86AQ8N2M4 240 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 OR10T2Q8NGX3 314 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 ELAC2Q9BQ52 826 aaKnown RBP15.62■□□□□ 0.09
GPC3-202ENST00000394299 ARHGEF4Q9NR80 690 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 PAK5Q9P286 719 aa15.62■□□□□ 0.09
GPC3-202ENST00000394299 MKI67P46013 3256 aaKnown RBP15.62■□□□□ 0.09
GPC3-202ENST00000394299 C5orf60A6NFR6 353 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 TCP11X1B4DZS4 312 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 KBTBD13C9JR72 458 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 MFSD11O43934 449 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 CORO7P57737 925 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 MBTPS1Q14703 1052 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 PRPF39Q86UA1 669 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 CAND1Q86VP6 1230 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 ZNF280BQ86YH2 543 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 RTP4Q96DX8 246 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 SLC2A13Q96QE2 648 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 KLF6Q99612 283 aaPredicted RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 PAIP2Q9BPZ3 127 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 DNAI2Q9GZS0 605 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 C12orf65Q9H3J6 166 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 CDH9Q9ULB4 789 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 KIF3CO14782 793 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 RPL9P32969 192 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 ARL4AP40617 200 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 WDR4P57081 412 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 IFRD2Q12894 506 aaPredicted RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 SPRED3Q2MJR0 410 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 SLC45A4Q5BKX6 768 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 EFHC2Q5JST6 749 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 RNF187Q5TA31 235 aaPredicted RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 C6orf89Q6UWU4 347 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 BHLHA9Q7RTU4 235 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 BNIPLQ7Z465 357 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 ATP11CQ8NB49 1132 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 STKLD1Q8NE28 680 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 RNF139Q8WU17 664 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 CFAP36Q96G28 342 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 TRABDQ9H4I3 376 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 GPBP1L1Q9HC44 474 aaPredicted RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 PIH1D1Q9NWS0 290 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 MRPL42Q9Y6G3 142 aaKnown RBP15.61■□□□□ 0.09
GPC3-202ENST00000394299 TEX264Q9Y6I9 313 aa15.61■□□□□ 0.09
GPC3-202ENST00000394299 ZNF638Q14966 1978 aaKnown RBP15.6■□□□□ 0.09
GPC3-202ENST00000394299 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.6■□□□□ 0.09
GPC3-202ENST00000394299 GOLGA8RI6L899 631 aa15.6■□□□□ 0.09
GPC3-202ENST00000394299 ALDH1A1P00352 501 aa15.6■□□□□ 0.09
GPC3-202ENST00000394299 OR4Q2P0C623 313 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms