RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SH3GL2Q99962 352 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 MIS12Q9H081 205 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 FAM204AQ9H8W3 233 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-202ENST00000389040 DNMT3BQ9UBC3 853 aaKnown RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 UTP11Q9Y3A2 253 aaKnown RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 TSC2P49815 1807 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 SLC38A8A6NNN8 435 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 CLDN5O00501 218 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 THAP12O43422 761 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 OPA1O60313 960 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 PHF2O75151 1096 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 LSM8O95777 96 aaKnown RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 CFHP08603 1231 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 PYGMP11217 842 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 HMGA1P17096 107 aaKnown RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 HSPA9P38646 679 aaKnown RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 RWDD2BP57060 319 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 NOMO3P69849 1222 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 ORC1Q13415 861 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 DHX34Q14147 1143 aaKnown RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 SNX30Q5VWJ9 437 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 GRASPQ7Z6J2 395 aaPredicted RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 DDX42Q86XP3 938 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS53-202ENST00000389040 PHF13Q86YI8 300 aaPredicted RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 PASD1Q8IV76 773 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 ZNF276Q8N554 614 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 TFAP2BQ92481 460 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 NXPE3Q969Y0 559 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 ACSF2Q96CM8 615 aaPredicted RBP10.65□□□□□ -0.7
VPS53-202ENST00000389040 SMOQ99835 787 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 CORO1BQ9BR76 489 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 LRRC3Q9BY71 257 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 RAB17Q9H0T7 212 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 FAM114A2Q9NRY5 505 aa10.65□□□□□ -0.7
VPS53-202ENST00000389040 GOLGA8KD6RF30 607 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 DAPK3O43293 454 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 FSHRP23945 695 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 YWHAQP27348 245 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ADORA2BP29275 332 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 CHRNA3P32297 505 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 SLC1A1P43005 524 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 RPL34P49207 117 aaKnown RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 TUBP50607 506 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MAP3K7CLP57077 242 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 GOLGA7BQ2TAP0 167 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 RAB41Q5JT25 222 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 PRSS36Q5K4E3 855 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 CFAP58Q5T655 872 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MON1AQ86VX9 555 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TMC8Q8IU68 726 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 IQCKQ8N0W5 287 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ARHGAP18Q8N392 663 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 KIAA1958Q8N8K9 716 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 VCPIP1Q96JH7 1222 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ZIM3Q96PE6 472 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 CDK5RAP1Q96SZ6 601 aaKnown RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 KCNK16Q96T55 309 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 C11orf70Q9BRQ4 267 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TRIM62Q9BVG3 475 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TMEM51Q9NW97 253 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ADAM22Q9P0K1 906 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 SCML2Q9UQR0 700 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MRPS23Q9Y3D9 190 aaKnown RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 USP3Q9Y6I4 520 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MYO7AQ13402 2215 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 FAM187AA6NFU0 413 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 HHLA1C9JL84 531 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MYO1FO00160 1098 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 FBXO21O94952 628 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 CDH5P33151 784 aaPredicted RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 GPD2P43304 727 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 SLC5A3P53794 718 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ARHGAP15Q53QZ3 475 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 C2CD6Q53TS8 623 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 PHLDB2Q86SQ0 1253 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 PIGZQ86VD9 579 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TTC30AQ86WT1 665 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 SLC13A5Q86YT5 568 aaPredicted RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 ADHFE1Q8IWW8 467 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 PRELID2Q8N945 189 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TMEM35BQ8NCS4 154 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 STKLD1Q8NE28 680 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 ZMIZ2Q8NF64 920 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 E2F7Q96AV8 911 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 LRRC45Q96CN5 670 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TRIM51Q9BSJ1 452 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TRIM7Q9C029 511 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 NEUROG2Q9H2A3 272 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 LRRC4Q9HBW1 653 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 MRPL47Q9HD33 250 aaKnown RBP10.64□□□□□ -0.71
VPS53-202ENST00000389040 CNGB3Q9NQW8 809 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 TRPM5Q9NZQ8 1165 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 EPS15L1Q9UBC2 864 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 CDH7Q9ULB5 785 aa10.64□□□□□ -0.71
VPS53-202ENST00000389040 GOLGA6CA6NDK9 693 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 M0QYV0 167 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 PROSCO94903 275 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms