RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 HMGA1P17096 107 aaKnown RBP12.96□□□□□ -0.33
VRK3-202ENST00000377011 PAX3P23760 479 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 EPHA5P54756 1037 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 GPC5P78333 572 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 CYP4F8P98187 520 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 MDH1BQ5I0G3 518 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 DCAF12L1Q5VU92 463 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 TANGO2Q6ICL3 276 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 NLRP14Q86W24 1093 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 TMEM86AQ8N2M4 240 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 OR6B3Q8NGW1 331 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 MYCBPAPQ8TBZ2 947 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 ZNF473Q8WTR7 871 aaKnown RBP12.96□□□□□ -0.33
VRK3-202ENST00000377011 ARHGEF26Q96DR7 871 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 PCED1BQ96HM7 432 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 THAP2Q9H0W7 228 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 VRTNQ9H8Y1 702 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 PCYOX1Q9UHG3 505 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 SORCS3Q9UPU3 1222 aa12.96□□□□□ -0.33
VRK3-202ENST00000377011 MYO1FO00160 1098 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 FOXN3O00409 490 aaPredicted RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 GPR37L1O60883 481 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 BDNFP23560 247 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 GNL1P36915 607 aaPredicted RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 PIK3CAP42336 1068 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 PPP2R2AP63151 447 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 GUCY1A3Q02108 690 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 PLD1Q13393 1074 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 FAM78AQ5JUQ0 283 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 TMEM31Q5JXX7 168 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 PAQR9Q6ZVX9 377 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 DPH6Q7L8W6 267 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 PLCD3Q8N3E9 789 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 UBLCP1Q8WVY7 318 aaPredicted RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 TATDN2Q93075 761 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 PSMG2Q969U7 264 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 CENPTQ96BT3 561 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 ZNF512Q96ME7 567 aaPredicted RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 LRRC3BQ96PB8 259 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 ZSWIM1Q9BR11 485 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 OXCT2Q9BYC2 517 aaPredicted RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 ZNF518BQ9C0D4 1074 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 SMG9Q9H0W8 520 aaKnown RBP12.96□□□□□ -0.34
VRK3-202ENST00000377011 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.96□□□□□ -0.34
VRK3-202ENST00000377011 PCDHB5Q9Y5E4 795 aa12.96□□□□□ -0.34
VRK3-202ENST00000377011 TMEM221A6NGB7 291 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 M0R296 226 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 FSBPO95073 299 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 CFHP08603 1231 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 ABCB4P21439 1286 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 CTNNA2P26232 953 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 VIPR2P41587 438 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 LHX1P48742 406 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 USP46P62068 366 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 TSPY1Q01534 308 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 DHX9Q08211 1270 aaKnown RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 TDGQ13569 410 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 CYP1B1Q16678 543 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 ARHGAP44Q17R89 818 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 SWT1Q5T5J6 900 aaKnown RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 PDZD4Q76G19 769 aaPredicted RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 RTL10Q7L3V2 364 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 DDX42Q86XP3 938 aaKnown RBP eCLIP12.95□□□□□ -0.34
VRK3-202ENST00000377011 FAM71AQ8IYT1 594 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 DCP1BQ8IZD4 617 aaKnown RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 OTUD6BQ8N6M0 293 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 TLCD1Q96CP7 247 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 FAM81BQ96LP2 452 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 CCT8L2Q96SF2 557 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 B3GNT5Q9BYG0 378 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 YY1AP1Q9H869 796 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 UBE2TQ9NPD8 197 aaPredicted RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 AVENQ9NQS1 362 aaPredicted RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 ZDHHC18Q9NUE0 388 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 ALG6Q9Y672 507 aa12.95□□□□□ -0.34
VRK3-202ENST00000377011 ZNF638Q14966 1978 aaKnown RBP12.95□□□□□ -0.34
VRK3-202ENST00000377011 ANAPC1Q9H1A4 1944 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 A8MXQ7 604 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 PTPN1P18031 435 aaKnown RBP12.94□□□□□ -0.34
VRK3-202ENST00000377011 GABRR2P28476 465 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 ATICP31939 592 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 GTF2H1P32780 548 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 ALDH1A3P47895 512 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 MXI1P50539 228 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 GTF2A1P52655 376 aaPredicted RBP12.94□□□□□ -0.34
VRK3-202ENST00000377011 EPHB3P54753 998 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 VCPP55072 806 aaKnown RBP12.94□□□□□ -0.34
VRK3-202ENST00000377011 MFAP3P55082 362 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 ZNF667Q5HYK9 610 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 SEL1L2Q5TEA6 688 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 ACOT1Q86TX2 421 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 DNAAF5Q86Y56 855 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 JAMLQ86YT9 394 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 C12orf29Q8N999 325 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 RIN3Q8TB24 985 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 SPPL2BQ8TCT7 592 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 IPO4Q8TEX9 1081 aaKnown RBP12.94□□□□□ -0.34
VRK3-202ENST00000377011 P3H4Q92791 437 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 PGM2Q96G03 612 aa12.94□□□□□ -0.34
VRK3-202ENST00000377011 TMEM109Q9BVC6 243 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms