RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C8orf34Q49A92 452 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 RRAGAQ7L523 313 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PID1Q7Z2X4 250 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ADHFE1Q8IWW8 467 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 CCDC185Q8N715 623 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PCDHA5Q9Y5H7 936 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 R4GN57 208 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 CAMTA1Q9Y6Y1 1673 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ITGA3P26006 1051 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 DUOXA1Q1HG43 343 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 VASH1Q7L8A9 365 aaPredicted RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 DENND1CQ8IV53 801 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 Q8N9G6 341 aaPredicted RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 TMEM74Q96NL1 305 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 DUSP23Q9BVJ7 150 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 HEY1Q9Y5J3 304 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ELFN1P0C7U0 828 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TKTL1P51854 596 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ATP2C1P98194 919 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ZNF252P-AS1Q0IIN9 211 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TOB2Q14106 344 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 MTF1Q14872 753 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PON2Q15165 354 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ATG9AQ7Z3C6 839 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ZNF614Q8N883 585 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 BTN2A2Q8WVV5 523 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KCNE4Q8WWG9 221 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 POU2F3Q9UKI9 436 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PPRC1Q5VV67 1664 aaKnown RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 RARGP13631 454 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 HDAC4P56524 1084 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 YWHAGP61981 247 aaKnown RBP eCLIP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 SNRPFP62306 86 aaKnown RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PURAQ00577 322 aaKnown RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 MYBPHQ13203 477 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PDCLQ13371 301 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 C4orf19Q8IY42 314 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 SECISBP2Q96T21 854 aaKnown RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TMEM121Q9BTD3 319 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 CBX8Q9HC52 389 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 C19orf25Q9UFG5 118 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PCDHGA4Q9Y5G9 962 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 HEPACAM2A8MVW5 462 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 MAGEA1P43355 309 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 RRADP55042 308 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 FOXK1P85037 733 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 PPARDQ03181 441 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ORC1Q13415 861 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ASTLQ6HA08 431 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 MAATS1Q7Z4T9 603 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 C10orf53Q8N6V4 93 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NETO1Q8TDF5 533 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 P3H4Q92791 437 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TMX3Q96JJ7 454 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ILKAPQ9H0C8 392 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ATP13A3Q9H7F0 1226 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 GPN2Q9H9Y4 310 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NPC1O15118 1278 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 VPS26AO75436 327 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KRT7P08729 469 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TAC1P20366 129 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 TLX1P31314 330 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NCALDP61601 193 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ARMC12Q5T9G4 340 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 SCIMPQ6UWF3 145 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KRBA2Q6ZNG9 492 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 DNAJB7Q7Z6W7 309 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 SETD3Q86TU7 594 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KIAA0319LQ8IZA0 1049 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KRT78Q8N1N4 520 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 FAM133AQ8N9E0 248 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 COL26A1Q96A83 441 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NSRP1Q9H0G5 558 aaKnown RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NEUROG2Q9H2A3 272 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 EPB41L4AQ9HCS5 686 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ZSCAN32Q9NX65 697 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KLQ9UEF7 1012 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 OGDHLQ9ULD0 1010 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 ZKSCAN5Q9Y2L8 839 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 NOX1Q9Y5S8 564 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 SQORQ9Y6N5 450 aa8.69□□□□□ -1.02
HMGB1-203ENST00000341423 KRT87PA6NCN2 255 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 SLC28A2O43868 658 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 NASPP49321 788 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 ANXA11P50995 505 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 SELENOVP59797 346 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 POLR2FP61218 127 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CCDC183Q5T5S1 534 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PRSS55Q6UWB4 352 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CCDC81Q6ZN84 652 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TRIM67Q6ZTA4 783 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TMEM156Q8N614 296 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 KCNJ9Q92806 393 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PRKD2Q9BZL6 878 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CLPBQ9H078 707 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 ABCC13Q9NSE7 274 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 STMN3Q9NZ72 180 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 NENFQ9UMX5 172 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CPQQ9Y646 472 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms