RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 ELAC1Q9H777 363 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 ARHGEF37A1IGU5 675 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 TGM2P21980 687 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 EIF3BP55884 814 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 MTM1Q13496 603 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 ANKRD22Q5VYY1 191 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 SLC39A5Q6ZMH5 540 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 TRMT10CQ7L0Y3 403 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 ZCCHC9Q8N567 271 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 SEZ6LQ9BYH1 1024 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 GPR62Q9BZJ7 368 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 DDIT4Q9NX09 232 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 PCDH10Q9P2E7 1040 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 TMEM189-UBE2V1I3L0A0 370 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 I6L893 689 aaPredicted RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 CREB3O43889 395 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 RBL1P28749 1068 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 HPDP32754 393 aaPredicted RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 TLE2Q04725 743 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 FAAP100Q0VG06 881 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 FAM171A1Q5VUB5 890 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 SDHAF4Q5VUM1 108 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 BSPRYQ5W0U4 402 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 TTC19Q6DKK2 380 aaPredicted RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 SCN4BQ8IWT1 228 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 EPS8L3Q8TE67 593 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 PGLYRP2Q96PD5 576 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 NINJ2Q9NZG7 142 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 ADAM28Q9UKQ2 775 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 KCNN4O15554 427 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 OAZ2O95190 189 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 COL6A1P12109 1028 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 MNX1P50219 401 aaPredicted RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 TRIM60Q495X7 471 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 VARS2Q5ST30 1063 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 CPT1BQ92523 772 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 USP29Q9HBJ7 922 aa23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 WDR6Q9NNW5 1121 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 NOVA2Q9UNW9 492 aaKnown RBP23.28■■□□□ 1.32
PDLIM2-203ENST00000339162 TCRBV7S3A2A0A539 114 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 HMGB1P1B2RPK0 211 aaPredicted RBP23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 TRAPPC3O43617 180 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 TTC4O95801 387 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 ARL4AP40617 200 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 PGFP49763 221 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 FASTKD3Q14CZ7 662 aaKnown RBP23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 MORF4L2Q15014 288 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 PM20D1Q6GTS8 502 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 C4orf50Q6ZRC1 276 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 VSIG1Q86XK7 387 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 DIS3LQ8TF46 1054 aaKnown RBP23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 PRCCQ92733 491 aaPredicted RBP23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 TSPYL1Q9H0U9 437 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 SAYSD1Q9NPB0 183 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 NR2E3Q9Y5X4 410 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 USP3Q9Y6I4 520 aa23.27■■□□□ 1.32
PDLIM2-203ENST00000339162 FAM72CH0Y354 149 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 BANF1O75531 89 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 UPP2O95045 317 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 SLC11A1P49279 550 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 SLC5A3P53794 718 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 BASP1P80723 227 aaKnown RBP23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 FAM72AQ5TYM5 149 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 NCBP2-AS2Q69YL0 99 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 FAM72DQ6L9T8 149 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 FAM72BQ86X60 149 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 ZCWPW1Q9H0M4 648 aa23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 FARP1Q9Y4F1 1045 aaPredicted RBP23.27■■□□□ 1.31
PDLIM2-203ENST00000339162 TBKBP1A7MCY6 615 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 ALDH2P05091 517 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 STIP1P31948 543 aaKnown RBP23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 GPR15P49685 360 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 ARPP19P56211 112 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 TMEM173Q86WV6 379 aaPredicted RBP23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 RNF139Q8WU17 664 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 MARCH5Q9NX47 278 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 NLRC5Q86WI3 1866 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 TTC3P53804 2025 aa23.26■■□□□ 1.31
PDLIM2-203ENST00000339162 NR1D1P20393 614 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 ADRA1BP35368 520 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 MAGEA4P43358 317 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 LONRF1Q17RB8 773 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 CRIPAKQ8N1N5 446 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 APBB2Q92870 758 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 ARHGEF4Q9NR80 690 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 ZNF487B1APH4 448 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 DDR2Q16832 855 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 CTXN3Q4LDR2 81 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 EFHC2Q5JST6 749 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 ZNF771Q7L3S4 317 aaPredicted RBP23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 ANKRD33Q7Z3H0 272 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 DTLQ9NZJ0 730 aa23.25■■□□□ 1.31
PDLIM2-203ENST00000339162 CAPN2P17655 700 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 MAGOHP61326 146 aaKnown RBP23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 HOOK3Q86VS8 718 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 NPAS4Q8IUM7 802 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 PPIL6Q8IXY8 311 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms