RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NUP93Q8N1F7 819 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TOX2Q96NM4 488 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SERPINB12Q96P63 405 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PITPNM3Q9BZ71 974 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TBC1D14Q9P2M4 693 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 FAM8A1Q9UBU6 413 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PLA2G4CQ9UP65 541 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 ADGRA3Q8IWK6 1321 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MDM4O15151 490 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 ATP5BP06576 529 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CNTFP26441 200 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PPP3CCP48454 512 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MAP3K7CLP57077 242 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SMAD3P84022 425 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF200P98182 395 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TWF1Q12792 350 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SMTNL2Q2TAL5 461 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PPP1R15BQ5SWA1 713 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CRLF3Q8IUI8 442 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MFN1Q8IWA4 741 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 DDI1Q8WTU0 396 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 HTR3CQ8WXA8 447 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 HDAC11Q96DB2 347 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 RNF157Q96PX1 679 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 VPS11Q9H270 941 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 ASAH2Q9NR71 780 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 THG1LQ9NWX6 298 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 FNIP2Q9P278 1114 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 GRID1Q9ULK0 1009 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MYH14Q7Z406 1995 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 FGF19O95750 216 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 GLUD1P00367 558 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 H2AFXP16104 143 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PLA2G4AP47712 749 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TSNAXIP1Q2TAA8 658 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 C2CD6Q53TS8 623 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SLC26A11Q86WA9 606 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 ECHDC2Q86YB7 292 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MTBPQ96DY7 904 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 HINFPQ9BQA5 517 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TRIM51Q9BSJ1 452 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 DDX23Q9BUQ8 820 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TBK1Q9UHD2 729 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 A0A1W2PQ67 120 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF263O14978 683 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 KDM1AO60341 852 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 NOL4O94818 638 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 HIST1H2AGP0C0S8 130 aaPredicted RBP7.09□□□□□ -1.28
SF3B1-201ENST00000335508 HIST1H2ADP20671 130 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 ITGALP20701 1170 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 FUT10Q6P4F1 479 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 KCNT2Q6UVM3 1135 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 MYLK4Q86YV6 388 aaPredicted RBP7.09□□□□□ -1.28
SF3B1-201ENST00000335508 DEPDC1BQ8WUY9 529 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 TRIB2Q92519 343 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 PTPRN2Q92932 1015 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 KCNN1Q92952 543 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 HIST1H2AHQ96KK5 128 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 HIST1H2AJQ99878 128 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 H2AFJQ9BTM1 129 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 ENTPD7Q9NQZ7 604 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 INSL6Q9Y581 213 aa7.09□□□□□ -1.28
SF3B1-201ENST00000335508 H0Y626 953 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PEX10O60683 326 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 NDUFS3O75489 264 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 DAB1O75553 588 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CST3P01034 146 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CYP1A1P04798 512 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ERCC2P18074 760 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 KDELR1P24390 212 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ITGA8P53708 1063 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MGAT5Q09328 741 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SLC25A52Q3SY17 297 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SLC39A12Q504Y0 691 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PPM1LQ5SGD2 360 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 BEND6Q5SZJ8 279 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SLC4A11Q8NBS3 891 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ZSWIM2Q8NEG5 633 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MUC3BQ9H195 1237 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ATP13A1Q9HD20 1204 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 TBC1D13Q9NVG8 400 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FGFR1OP2Q9NVK5 253 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 WRAP73Q9P2S5 460 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 NOCTQ9UK39 431 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FNDC3AQ9Y2H6 1198 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 DNALI1O14645 258 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SH3BP5O60239 455 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 BRCC3P46736 316 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 STARD3Q14849 445 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CCL14Q16627 93 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 LNX1Q8TBB1 728 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 NTAN1Q96AB6 310 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ULK4Q96C45 1275 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PGM2Q96G03 612 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 DCUN1D1Q96GG9 259 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 AGAP3Q96P47 875 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 UNC93B1Q9H1C4 597 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ELAC1Q9H777 363 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SYTL2Q9HCH5 934 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 TRPC7Q9HCX4 862 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms