RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TUBGCP4Q9UGJ1 667 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ZC3H7BQ9UGR2 993 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 F5H423 210 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ZBTB14O43829 449 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ATP2B4P23634 1241 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC1A6P48664 564 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 NAA20P61599 178 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 XIAPP98170 497 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 C16orf72Q14CZ0 275 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 PDPK2PQ6A1A2 396 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ZBTB46Q86UZ6 589 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 CCDC33Q8N5R6 958 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 TMC2Q8TDI7 906 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 PAIP2BQ9ULR5 123 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 FOCADQ5VW36 1801 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 BTBD19C9JJ37 291 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 DHX15O43143 795 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ADCY6O43306 1168 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 F7P08709 466 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 VIL1P09327 827 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 THRAP10827 490 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 COL6A2P12110 1019 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 QARSP47897 775 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 NLRP11P59045 1033 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 YWHAZP63104 245 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 C1QBPQ07021 282 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 RAB6CQ53S08 254 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 PPM1LQ5SGD2 360 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ANGEL2Q5VTE6 544 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 C15orf52Q6ZUT6 534 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 PTAR1Q7Z6K3 402 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 NLGN1Q8N2Q7 840 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ADAM32Q8TC27 787 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 LZICQ8WZA0 190 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 USP13Q92995 863 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 RAB6CQ9H0N0 254 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 SPATA7Q9P0W8 599 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF541Q9H0D2 1346 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 CFLARO15519 480 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 TNFAIP8O95379 198 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 TBCCQ15814 346 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ABCB5Q2M3G0 1257 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ITPRIPL1Q6GPH6 555 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 DARS2Q6PI48 645 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ENOSF1Q7L5Y1 443 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 MAP4K3Q8IVH8 894 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 NUP93Q8N1F7 819 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 GPD1LQ8N335 351 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 MPP5Q8N3R9 675 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ACER1Q8TDN7 264 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 JADE3Q92613 823 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 PGBD4Q96DM1 585 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ZBTB45Q96K62 511 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 LRGUKQ96M69 825 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 HERC5Q9UII4 1024 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ZNF180Q9UJW8 692 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 MAPTP10636 758 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 KDELR1P24390 212 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 PSMA2P25787 234 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 L1CAMP32004 1257 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 SERPINB5P36952 375 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 CDH15P55291 814 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 HSP90AA5PQ58FG0 334 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 RAB3IL1Q8TBN0 382 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 PKP2Q99959 881 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 RNPEPQ9H4A4 650 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 FBXO28Q9NVF7 368 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 COL20A1Q9P218 1284 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 PSMD13Q9UNM6 376 aa13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ASTN2O75129 1339 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-201ENST00000331194 ARHGAP10A1A4S6 786 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 STX16-NPEPL1H3BU86 382 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 LRCH4O75427 683 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 FAM58BPP0C7Q3 252 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 FGF3P11487 239 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 XRCC1P18887 633 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 TCN1P20061 433 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 MTTPP55157 894 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 PSMD6Q15008 389 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 C15orf39Q6ZRI6 1047 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 TMEM110Q86TL2 294 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 WDTC1Q8N5D0 677 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 FAM156AQ8NDB6 213 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 SLC35B4Q969S0 331 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 FBXL18Q96ME1 805 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 MXRA8Q9BRK3 442 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 DCUN1D5Q9BTE7 237 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 PIH1D1Q9NWS0 290 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 ITGA11Q9UKX5 1188 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 TRIM43BA6NCK2 446 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 SPDYE2BA6NHP3 402 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 KLHL2O95198 593 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 ZBTB7AO95365 584 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 C4BPAP04003 597 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 SPDYE6P0CI01 402 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 ADORA2AP29274 412 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 MS4A2Q01362 244 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 APOFQ13790 326 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 SPDYE2Q495Y8 402 aa13.88□□□□□ -0.19
CCDC88C-201ENST00000331194 MBLAC2Q68D91 279 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms