RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 CXCR3P49682 368 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 NNTQ13423 1086 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 SMTNL2Q2TAL5 461 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 ATP13A4Q4VNC1 1196 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 SEL1L2Q5TEA6 688 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 TMEM150AQ86TG1 271 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 FAM131BQ86XD5 332 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CREG2Q8IUH2 290 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 PSTKQ8IV42 348 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 RASGEF1CQ8N431 466 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 NTAN1Q96AB6 310 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 SNRNP25Q9BV90 132 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CCSER2Q9H7U1 834 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 COX16Q9P0S2 106 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 RNF14Q9UBS8 474 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CEP104O60308 925 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 RFPL2O75678 378 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 PAPLNO95428 1278 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 PYGMP11217 842 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 AIF1P55008 147 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CKAP4Q07065 602 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 ZNF211Q13398 564 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 PABPC1LQ4VXU2 614 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 C10orf120Q5SQS8 335 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 HECTD3Q5T447 861 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 KLHDC10Q6PID8 442 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 RCOR2Q8IZ40 523 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CCDC185Q8N715 623 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 ACSF2Q96CM8 615 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 CAPZA3Q96KX2 299 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 NSUN3Q9H649 340 aaKnown RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 ASAH2Q9NR71 780 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 KLHL11Q9NVR0 708 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 SFMBT1Q9UHJ3 866 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 NUDT5Q9UKK9 219 aa10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 TTC7AQ9ULT0 858 aaPredicted RBP10.66□□□□□ -0.7
VIPAS39-201ENST00000327028 ZRANB2O95218 330 aaKnown RBP eCLIP10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 FGF19O95750 216 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 CDC25CP30307 473 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 EPHA5P54756 1037 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 SCAPQ12770 1279 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 EFEMP1Q12805 493 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 KCNC3Q14003 757 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 CLUL1Q15846 466 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 KCNT1Q5JUK3 1230 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 BRMS1LQ5PSV4 323 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 ERMARDQ5T6L9 678 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 HS6ST3Q8IZP7 471 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 CMASQ8NFW8 434 aaPredicted RBP10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 ACTRT1Q8TDG2 376 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 HSPH1Q92598 858 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 GCNAQ96QF7 691 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 DZANK1Q9NVP4 752 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 MARCH2Q9P0N8 246 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 RASAL2Q9UJF2 1139 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 FZD10Q9ULW2 581 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 AP4E1Q9UPM8 1137 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 TLR6Q9Y2C9 796 aa10.65□□□□□ -0.7
VIPAS39-201ENST00000327028 LRRD1A4D1F6 860 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 C3orf70A6NLC5 250 aaPredicted RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 PGRMC1O00264 195 aaKnown RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 MSI1O43347 362 aaKnown RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 OAS1P00973 400 aaKnown RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 GABRR2P28476 465 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 PTPN7P35236 360 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 ARSEP51690 589 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 COPS2P61201 443 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 PPP2R5DQ14738 602 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 TRIP4Q15650 581 aaPredicted RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 ODF2Q5BJF6 829 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 ZFYVE27Q5T4F4 411 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 CCDC181Q5TID7 509 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 CCDC50Q8IVM0 306 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 LEMD2Q8NC56 503 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 VN1R2Q8NFZ6 395 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 FAM71BQ8TC56 605 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 RAPGEF5Q92565 580 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 MS4A14Q96JA4 679 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 CORO1BQ9BR76 489 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 PRKD2Q9BZL6 878 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 ARHGEF38Q9NXL2 777 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 LMCD1Q9NZU5 365 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 DNMT3LQ9UJW3 386 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 COLQQ9Y215 455 aaPredicted RBP10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 TRIOBPQ9H2D6 2365 aa10.65□□□□□ -0.71
VIPAS39-201ENST00000327028 SPDYE4A6NLX3 237 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 PI4K2BG5E9Z4 385 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 TBX18O95935 607 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 PTPN2P17706 415 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 KDELR1P24390 212 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 CCR1P32246 355 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 ATP5C1P36542 298 aaKnown RBP10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 CETN2P41208 172 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 KPNA1P52294 538 aaPredicted RBP10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 TBX4P57082 545 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 PDK2Q15119 407 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 PPP2R5EQ16537 467 aa10.64□□□□□ -0.71
VIPAS39-201ENST00000327028 DPYSL2Q16555 572 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms