RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CCDC130P13994 396 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DDX5P17844 614 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 IL12RB1P42701 662 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 TAF6P49848 677 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SLC26A2P50443 739 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 ITGADQ13349 1161 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PDK3Q15120 406 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PKN2Q16513 984 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 FUT11Q495W5 492 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 GNASQ5JWF2 1037 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 ZNF618Q5T7W0 954 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 FKBP1CQ5VVH2 108 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 NAPEPLDQ6IQ20 393 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SLC30A10Q6XR72 485 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SV2AQ7L0J3 742 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 NIPA1Q7RTP0 329 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 KDELC2Q7Z4H8 507 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 TDRD5Q8NAT2 981 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 ST13P5Q8NFI4 369 aaPredicted RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 ACSF2Q96CM8 615 aaPredicted RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 DPP3Q9NY33 737 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 STK39Q9UEW8 545 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 KCNH4Q9UQ05 1017 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 ARIH1Q9Y4X5 557 aaPredicted RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 PROSCO94903 275 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SERPINE1P05121 402 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DSG3P32926 999 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 CPT1AP50416 773 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PTK6Q13882 451 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 MAPRE1Q15691 268 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 DCAF6Q58WW2 860 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 NT5DC3Q86UY8 548 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DNERQ8NFT8 737 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PYDC1Q8WXC3 89 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PCDH9Q9HC56 1237 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS39-201ENST00000318006 KCNK4Q9NYG8 393 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 AFF4Q9UHB7 1163 aaKnown RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 PCDHGC5Q9Y5F6 944 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 TADA2AO75478 443 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 KRT36O76013 467 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 PSMB9P28065 219 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 GCLCP48506 637 aaPredicted RBP11.83□□□□□ -0.52
VPS39-201ENST00000318006 POU5F2Q8N7G0 328 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DLG3Q92796 817 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 DCLK3Q9C098 648 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS39-201ENST00000318006 CTNNAL1Q9UBT7 734 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SYNPO2Q9UMS6 1093 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 ACTL7BQ9Y614 415 aa11.83□□□□□ -0.52
VPS39-201ENST00000318006 SDR42E2A6NKP2 422 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 VWA5AO00534 786 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 LCA5LO95447 670 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 GTF2A2P52657 109 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 AGAP9Q5VTM2 703 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 METTL7BQ6UX53 244 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ZNF554Q86TJ5 538 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ZNF398Q8TD17 642 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 OSCP1Q8WVF1 389 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 MKL1Q969V6 931 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 PLEKHA8Q96JA3 519 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 MRIQ9BWK5 157 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 USE1Q9NZ43 259 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 LMCD1Q9NZU5 365 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 TMCO1Q9UM00 188 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SUPT7LO94864 414 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 CYP2C8P10632 490 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 TGM2P21980 687 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 CCNHP51946 323 aaPredicted RBP11.82□□□□□ -0.52
VPS39-201ENST00000318006 NFYCQ13952 458 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 PARP6Q2NL67 630 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 TMEM63BQ5T3F8 832 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 BNIPLQ7Z465 357 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 FBXO16Q8IX29 292 aaPredicted RBP11.82□□□□□ -0.52
VPS39-201ENST00000318006 TMEM121Q9BTD3 319 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 LRRC4BQ9NT99 713 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 KIAA1257Q9ULG3 409 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 PNMA8CA0A1B0GUJ8 204 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SYNDIG1LA6NDD5 238 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ZNF263O14978 683 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 PGM3O95394 542 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ATP6V1B2P21281 511 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SLC1A6P48664 564 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 NCALDP61601 193 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 AUHQ13825 339 aaKnown RBP11.82□□□□□ -0.52
VPS39-201ENST00000318006 C2CD6Q53TS8 623 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 GLB1LQ6UWU2 654 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 KCNK18Q7Z418 384 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ATPAF2Q8N5M1 289 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 FNIP1Q8TF40 1166 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SLC35C1Q96A29 364 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 MCRS1Q96EZ8 462 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ZNF518BQ9C0D4 1074 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SFMBT1Q9UHJ3 866 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 SORCS3Q9UPU3 1222 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ADGRA2Q96PE1 1338 aa11.82□□□□□ -0.52
VPS39-201ENST00000318006 ADCY6O43306 1168 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CNOT3O75175 753 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 NDUFS3O75489 264 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 RRM1P23921 792 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms