RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DUS1LQ6P1R4 473 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 SCN4BQ8IWT1 228 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 TCTE3Q8IZS6 198 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 RAB42Q8N4Z0 105 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PCSK9Q8NBP7 692 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC44A1Q8WWI5 657 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 COX4I2Q96KJ9 171 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 LRFN5Q96NI6 719 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 TMEM79Q9BSE2 394 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CBX8Q9HC52 389 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 TRNAU1APQ9NX07 287 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 MOCS1Q9NZB8 636 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 REV1Q9UBZ9 1251 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHB4Q9Y5E5 795 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 STK36Q9NRP7 1315 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 KIF28PB7ZC32 967 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 F6X3S4 739 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 H3BQ06 376 aaPredicted RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 GNPATO15228 680 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF682O95780 498 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ZBTB48P10074 688 aaPredicted RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 DSG3P32926 999 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 MPIP34949 423 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 SULT1E1P49888 294 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 GRB2P62993 217 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ACCSLQ4AC99 568 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 RC3H1Q5TC82 1133 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 PDE12Q6L8Q7 609 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF705AQ6ZN79 300 aaPredicted RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 PIK3AP1Q6ZUJ8 805 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC9B2Q86UD5 537 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 IFNL1Q8IU54 200 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ZBTB8OSQ8IWT0 167 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 REXO1Q8N1G1 1221 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 RCN3Q96D15 328 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 CUEDC2Q9H467 287 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 ZSWIM6Q9HCJ5 1215 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 GPAMQ9HCL2 828 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 A1CFQ9NQ94 594 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 RASSF1Q9NS23 344 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 NFU1Q9UMS0 254 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 TDRKHQ9Y2W6 561 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHGA5Q9Y5G8 931 aa7.84□□□□□ -1.16
LIMCH1-201ENST00000313860 MID1O15344 667 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PLIN3O60664 434 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FTCDO95954 541 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PLATP00750 562 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PRKCAP17252 672 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC2A5P22732 501 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 UGT2B10P36537 528 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 CRKP46108 304 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 CRADDP78560 199 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 CUL2Q13617 745 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PPM1LQ5SGD2 360 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TRIM65Q6PJ69 517 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 KDELC2Q7Z4H8 507 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DPPA2Q7Z7J5 298 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FOXP4Q8IVH2 680 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ARMC10Q8N2F6 343 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FANCBQ8NB91 859 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TSTD1Q8NFU3 115 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TPD52L3Q96J77 140 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ADAM33Q9BZ11 813 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 AKIRIN1Q9H9L7 192 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 SAGE1Q9NXZ1 904 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 HMG20BQ9P0W2 317 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 NPFFR2Q9Y5X5 522 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 RPRD2Q5VT52 1461 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 KIAA1324LA8MWY0 1029 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 EVPLLA8MZ36 301 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PTGES3LE9PB15 166 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 I3L521 148 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ABLIM1O14639 778 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DEDDO75618 318 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PTBP3O95758 552 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 HSD17B3P37058 310 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF41P51814 821 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ATXN1P54253 815 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 LRRC24Q50LG9 513 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF367Q7RTV3 350 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 C16orf71Q8IYS4 520 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ATG16L2Q8NAA4 619 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 Q96MT0 163 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 GFM1Q96RP9 751 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 E9PAM4 449 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 BOLA2-SMG1P6H3BVE0 249 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 HNRNPDLO14979 420 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MAGEC1O60732 1142 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 KLHL2O95198 593 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 CCNDBP1O95273 360 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PRKACGP22612 351 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MZF1P28698 734 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TAF6P49848 677 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 COPZ1P61923 177 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TFAMQ00059 246 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TTLL4Q14679 1199 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DENND5AQ6IQ26 1287 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FASTKD5Q7L8L6 764 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms