RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ZNF394Q53GI3 561 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 GLRA4Q5JXX5 417 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ACAD11Q709F0 780 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 SLFN11Q7Z7L1 901 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 PRPF39Q86UA1 669 aaKnown RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 TMC2Q8TDI7 906 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TAS1R2Q8TE23 839 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 FAM84AQ96KN4 292 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 GCNAQ96QF7 691 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 APEX2Q9UBZ4 518 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 DOLKQ9UPQ8 538 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 DTNAQ9Y4J8 743 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 A0A0J9YVX5 310 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 FKBP6O75344 327 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 PTGIRP43119 386 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ACLYP53396 1101 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 YWHAEP62258 255 aaKnown RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 ITGA9Q13797 1035 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TMEM132DQ14C87 1099 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 ZSWIM2Q8NEG5 633 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TRPV1Q8NER1 839 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 GDPD5Q8WTR4 605 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 USP6NLQ92738 828 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 CLPTM1LQ96KA5 538 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 FIZ1Q96SL8 496 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TRIM56Q9BRZ2 755 aaKnown RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 MTMR12Q9C0I1 747 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 KATNBL1Q9H079 304 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 TAS2R1Q9NYW7 299 aa11.29□□□□□ -0.6
LSM3-201ENST00000306024 BARX2Q9UMQ3 279 aaPredicted RBP11.29□□□□□ -0.6
LSM3-201ENST00000306024 KIAA1217Q5T5P2 1943 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 BOLA2-SMG1P6H3BVE0 249 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 LPXNO60711 386 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PRKCIP41743 596 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PDE1BQ01064 536 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PPP3CAQ08209 521 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PSMD6Q15008 389 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CBWD6Q4V339 395 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CBWD3Q5JTY5 395 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CBWD5Q5RIA9 395 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CGB2Q6NT52 195 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 RINLQ6ZS11 566 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 ANKMY2Q8IV38 441 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 BEST2Q8NFU1 509 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 RFWD2Q8NHY2 731 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 C10orf82Q8WW14 230 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 AGPAT1Q99943 283 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 STK33Q9BYT3 514 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TMEM117Q9H0C3 514 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CDT1Q9H211 546 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PRDM5Q9NQX1 630 aaPredicted RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 SPATA7Q9P0W8 599 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TNFSF13BQ9Y275 285 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 ZNF510Q9Y2H8 683 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 STXBP5LQ9Y2K9 1186 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TRPV2Q9Y5S1 764 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CCDC195A0A1B0GUA6 201 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 XPO1O14980 1071 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 MAGEB3O15480 346 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PAX3P23760 479 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 AP3M2P53677 418 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 ESRRGP62508 458 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 POU5F1Q01860 360 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 DCAF4L1Q3SXM0 396 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 DCAF12L1Q5VU92 463 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 LPCAT4Q643R3 524 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 CENPUQ71F23 418 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PXYLP1Q8TE99 480 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PYROXD1Q8WU10 500 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 ELMO3Q96BJ8 720 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 HSPBAP1Q96EW2 488 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 FAM193BQ96PV7 902 aaPredicted RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 MIPEPQ99797 713 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 MINDY3Q9H8M7 445 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 PSMC3IPQ9P2W1 217 aaPredicted RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 LRFN2Q9ULH4 789 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TRPM7Q96QT4 1865 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 MROH7Q68CQ1 1323 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 A0A0B4J269 797 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TCRBV7S2A1N4TA0A589 114 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 GPR182O15218 404 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 IL18RAPO95256 599 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 INHBAP08476 426 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 T-ENOLP0DO92 83 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 ADSSP30520 456 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 TNFSF9P41273 254 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 NOP14P78316 857 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 MRPS6P82932 125 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 TBL3Q12788 808 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 PDIA2Q13087 525 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 KRT80Q6KB66 452 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 C12orf56Q8IXR9 622 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 LNX1Q8TBB1 728 aaPredicted RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 PRPF18Q99633 342 aaKnown RBP11.28□□□□□ -0.6
LSM3-201ENST00000306024 PDLIM7Q9NR12 457 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 SNTG2Q9NY99 539 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 HES2Q9Y543 173 aa11.28□□□□□ -0.6
LSM3-201ENST00000306024 MYH11P35749 1972 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 P4HA2O15460 535 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 RNASEH1O60930 286 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms