RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 SLC9A4Q6AI14 798 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 TRIM68Q6AZZ1 485 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 UNC5AQ6ZN44 842 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 IFNLR1Q8IU57 520 aaPredicted RBP13.37□□□□□ -0.27
HIF3A-204ENST00000300862 UNC5BQ8IZJ1 945 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 SLC4A5Q9BY07 1137 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 IQCGQ9H095 443 aaKnown RBP13.37□□□□□ -0.27
HIF3A-204ENST00000300862 RNPEPL1Q9HAU8 725 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 SPATS2LQ9NUQ6 558 aaKnown RBP13.37□□□□□ -0.27
HIF3A-204ENST00000300862 SLC17A6Q9P2U8 582 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 HESX1Q9UBX0 185 aa13.37□□□□□ -0.27
HIF3A-204ENST00000300862 SLC15A5A6NIM6 579 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 AKAP5P24588 427 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 LMO2P25791 158 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 CRADDP78560 199 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 PRKD1Q15139 912 aaPredicted RBP13.36□□□□□ -0.27
HIF3A-204ENST00000300862 GRIK4Q16099 956 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 SOWAHAQ2M3V2 549 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 MROH9Q5TGP6 573 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 CES4AQ5XG92 561 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 RFWD3Q6PCD5 774 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 TMEM110Q86TL2 294 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 SESTD1Q86VW0 696 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 PPTC7Q8NI37 304 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 KLK14Q9P0G3 267 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 ARMCX1Q9P291 453 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 A8MXQ7 604 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 TSHRP16473 764 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 TGM2P21980 687 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 HOXA11P31270 313 aaPredicted RBP13.36□□□□□ -0.27
HIF3A-204ENST00000300862 L1CAMP32004 1257 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 IRX4P78413 519 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 PPIL2Q13356 520 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 TTC39BQ5VTQ0 682 aaPredicted RBP13.36□□□□□ -0.27
HIF3A-204ENST00000300862 ANO7Q6IWH7 933 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 KCNT2Q6UVM3 1135 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 CCDC185Q8N715 623 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 INPP5DQ92835 1189 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 CEP41Q9BYV8 373 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 DENND2DQ9H6A0 471 aaPredicted RBP13.36□□□□□ -0.27
HIF3A-204ENST00000300862 TMPRSS4Q9NRS4 437 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 MARCOQ9UEW3 520 aaPredicted RBP13.36□□□□□ -0.27
HIF3A-204ENST00000300862 KIAA1257Q9ULG3 409 aa13.36□□□□□ -0.27
HIF3A-204ENST00000300862 SYNJ2BP-COX16A0A087WUM0 186 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 BCLAF3A2AJT9 711 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 DPYSL4O14531 572 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 SNRPAP09012 282 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 DLDP09622 509 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 KITP10721 976 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 MYL2P10916 166 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 AMPD1P23109 780 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 GRM5P41594 1212 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 MRPS5P82675 430 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 ZNF534Q76KX8 674 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 SPDYE1Q8NFV5 336 aaPredicted RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 RTP4Q96DX8 246 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 NXF3Q9H4D5 531 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 PCMTD2Q9NV79 361 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 COX16Q9P0S2 106 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 CNTN3Q9P232 1028 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 LRRC42Q9Y546 428 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 RFPL1O75677 317 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 HAUS5O94927 633 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 TPBGLP0DKB5 382 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 CALB2P22676 271 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 TUBP50607 506 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 DENND5BQ6ZUT9 1274 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 FASTKD5Q7L8L6 764 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 ALYREFQ86V81 257 aaKnown RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 VPS52Q8N1B4 723 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 TEKT4Q8WW24 435 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 ANKRD27Q96NW4 1050 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 NUDCD1Q96RS6 583 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 OSMRQ99650 979 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 GOLGA2P5Q9HBQ8 144 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.35□□□□□ -0.27
HIF3A-204ENST00000300862 RNF181Q9P0P0 153 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 AP4E1Q9UPM8 1137 aa13.35□□□□□ -0.27
HIF3A-204ENST00000300862 HMX2A2RU54 273 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 DPPA5A6NC42 116 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 A6NJR5 290 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 MAP3K13O43283 966 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 SPAG6O75602 509 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 KRT37O76014 449 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 APOEP02649 317 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 CALRP27797 417 aaKnown RBP13.34□□□□□ -0.27
HIF3A-204ENST00000300862 PTPN4P29074 926 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 CPA2P48052 419 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 RASSF2P50749 326 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 ZNF792Q3KQV3 632 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 BSPRYQ5W0U4 402 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 CATSPER4Q7RTX7 472 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 CHSY1Q86X52 802 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 FAM131BQ86XD5 332 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 STK32AQ8WU08 396 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 KCTD15Q96SI1 283 aaPredicted RBP13.34□□□□□ -0.27
HIF3A-204ENST00000300862 LGMNQ99538 433 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 ZNF670Q9BS34 389 aa13.34□□□□□ -0.27
HIF3A-204ENST00000300862 CADM1Q9BY67 442 aaKnown RBP13.34□□□□□ -0.27
HIF3A-204ENST00000300862 MTMR10Q9NXD2 777 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms