RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 PRSS55Q6UWB4 352 aaPredicted RBP20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 ZDHHC24Q6UX98 284 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 STKLD1Q8NE28 680 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 PCDH19Q8TAB3 1148 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 FBXO25Q8TCJ0 367 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 FAF2Q96CS3 445 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 PGAP3Q96FM1 320 aaPredicted RBP20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 WDR6Q9NNW5 1121 aaKnown RBP20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 ASIC3Q9UHC3 531 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 FZD10Q9ULW2 581 aa20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 DRG1Q9Y295 367 aaKnown RBP20.46■□□□□ 0.87
TNFRSF1A-201ENST00000162749 ZNF487B1APH4 448 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ITGAVP06756 1048 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 IVDP26440 423 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 MAGEA11P43364 429 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 GPR15P49685 360 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 LMNB2Q03252 620 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TFDP2Q14188 446 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SDHAF4Q5VUM1 108 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PQLC3Q8N755 202 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 C8orf48Q96LL4 319 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 FMO2Q99518 471 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 FRMD8P1Q9BZ68 369 aaPredicted RBP20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TMPRSS4Q9NRS4 437 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 RRN3Q9NYV6 651 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 MTMR11A4FU01 709 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 H7C4K7 107 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TRIM66O15016 1216 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TP73O15350 636 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 EFCAB14O75071 495 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 GBP1P32455 592 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 USP41Q3LFD5 358 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 KCNT2Q6UVM3 1135 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 GSTA5Q7RTV2 222 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PSTKQ8IV42 348 aaKnown RBP20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PYROXD2Q8N2H3 581 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ALLCQ8N6M5 410 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PLD5Q8N7P1 536 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 KCTD15Q96SI1 283 aaPredicted RBP20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 RUFY1Q96T51 708 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TMEM121Q9BTD3 319 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 DDIT4Q9NX09 232 aa20.45■□□□□ 0.86
TNFRSF1A-201ENST00000162749 VNN2O95498 520 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 KLRC2P26717 231 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SLC9A4Q6AI14 798 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ZNF365Q70YC5 407 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 UBE2Q1Q7Z7E8 422 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PRUNE1Q86TP1 453 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 GLIS1Q8NBF1 620 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SLC9A7Q96T83 725 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 CRISPLD1Q9H336 500 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 CDY1Q9Y6F8 540 aa20.44■□□□□ 0.86
TNFRSF1A-201ENST00000162749 PGFP49763 221 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 NPNTQ6UXI9 565 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 LRRC31Q6UY01 552 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 RNF19BQ6ZMZ0 732 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 BEND5Q7L4P6 421 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 OTOP2Q7RTS6 562 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 NUP93Q8N1F7 819 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 CCDC89Q8N998 374 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SPPL2BQ8TCT7 592 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 OXCT2Q9BYC2 517 aaPredicted RBP20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 NUP205Q92621 2012 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 I6L893 689 aaPredicted RBP20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 VPS41P49754 854 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 YWHAGP61981 247 aaKnown RBP eCLIP20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SPOUT1Q5T280 376 aaKnown RBP20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 LEKR1Q6ZMV7 388 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 FBXO22Q8NEZ5 403 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 P3H4Q92791 437 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 TRIM62Q9BVG3 475 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.43■□□□□ 0.862e-6■■□□□ 12.2
TNFRSF1A-201ENST00000162749 CWC15Q9P013 229 aaKnown RBP20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 WHRNQ9P202 907 aa20.43■□□□□ 0.86
TNFRSF1A-201ENST00000162749 RANBP2P49792 3224 aaKnown RBP20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 APOL1O14791 398 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SHOX2O60902 331 aaPredicted RBP20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 BAIAP3O94812 1187 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SMARCB1Q12824 385 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 BTG3Q14201 252 aaPredicted RBP20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 NOMO1Q15155 1222 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SCD5Q86SK9 330 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ART4Q93070 314 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 NTAN1Q96AB6 310 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SNF8Q96H20 258 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 CSPG4P5Q96PW8 444 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ANLNQ9NQW6 1124 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 ABCC13Q9NSE7 274 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 MTRRQ9UBK8 725 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SLC27A5Q9Y2P5 690 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 LAMA3Q16787 3333 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 MYO18AQ92614 2054 aaKnown RBP20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 MCF2LO15068 1137 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 SOAT2O75908 522 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 F9P00740 461 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 GOT1P17174 413 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 EN2P19622 333 aaPredicted RBP20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 AIF1P55008 147 aa20.42■□□□□ 0.86
TNFRSF1A-201ENST00000162749 USP46P62068 366 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms