RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 KLHL30Q0D2K2 578 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 RUNX3Q13761 415 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 E4F1Q66K89 784 aaPredicted RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 ASTLQ6HA08 431 aaPredicted RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 TRIM72Q6ZMU5 477 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ZNF662Q6ZS27 426 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 BHLHA9Q7RTU4 235 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 PASD1Q8IV76 773 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ARHGAP18Q8N392 663 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 OSCP1Q8WVF1 389 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ZFRQ96KR1 1074 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 EIF3CQ99613 913 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 DDX23Q9BUQ8 820 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 FOXQ1Q9C009 403 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 LINC00597Q9H2U6 94 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 LUC7LQ9NQ29 371 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 HPS4Q9NQG7 708 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 CNGB3Q9NQW8 809 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ST7Q9NRC1 585 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLN3-261ENST00000637686 DUS2Q9NX74 493 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 CFAP97Q9P2B7 532 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 DNMT3LQ9UJW3 386 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 MTF2Q9Y483 593 aaPredicted RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 WNT6Q9Y6F9 365 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 EPN1Q9Y6I3 576 aaPredicted RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLN3-261ENST00000637686 PIAS3Q9Y6X2 628 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 TICRRQ7Z2Z1 1910 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 HELZP42694 1942 aaKnown RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 KANSL1LA0AUZ9 987 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 OTOL1A6NHN0 477 aaPredicted RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 SHISA7A6NL88 538 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 IPO7O95373 1038 aaKnown RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 IRF1P10914 325 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 GZMAP12544 262 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CYP11B1P15538 503 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 SOX9P48436 509 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 IFNAR2P48551 515 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CLCN5P51795 746 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 KRT83P78385 493 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CDR2Q01850 454 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 UBXN2BQ14CS0 331 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 PDGFRLQ15198 375 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 SLC18A3Q16572 532 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 ITPRIPL2Q3MIP1 535 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 TDRD12Q587J7 1177 aaKnown RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 C10orf120Q5SQS8 335 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 ZNF852Q6ZMS4 543 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 TADA2BQ86TJ2 420 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 DDX42Q86XP3 938 aaKnown RBP eCLIP10.33□□□□□ -0.76
CLN3-261ENST00000637686 WDTC1Q8N5D0 677 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 TMEM105Q8N8V8 129 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 EPS8L1Q8TE68 723 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CLEC4CQ8WTT0 213 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 WBP2Q969T9 261 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CCDC42Q96M95 316 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 KLF16Q9BXK1 252 aaPredicted RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 MIS12Q9H081 205 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 HAUS4Q9H6D7 363 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 NHEJ1Q9H9Q4 299 aaPredicted RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 LTB4R2Q9NPC1 389 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CLIC5Q9NZA1 410 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 CYTH4Q9UIA0 394 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 RASAL2Q9UJF2 1139 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 NOCTQ9UK39 431 aaKnown RBP10.33□□□□□ -0.76
CLN3-261ENST00000637686 NENFQ9UMX5 172 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 PCDHGC3Q9UN70 934 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 SH3BP1Q9Y3L3 701 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 COL4A2P08572 1712 aa10.33□□□□□ -0.76
CLN3-261ENST00000637686 KIF26AQ9ULI4 1882 aaPredicted RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 GOLGA6L9A6NEM1 432 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 FAM170BA6NMN3 283 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 YJEFN3A6XGL0 299 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 E5RJQ4 531 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 E7ENQ6 273 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 SPECC1L-ADORA2AF8WAN1 911 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 MAN2B1O00754 1011 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 FBXO21O94952 628 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 NDUFA10O95299 355 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 DCNP07585 359 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 GLULP15104 373 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 AOC1P19801 751 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 TARSP26639 723 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 ACADSBP45954 432 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 RPL34P49207 117 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 MLLT6P55198 1093 aaPredicted RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 DAOAP59103 153 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 GOLGA8FQ08AF8 430 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 GOLGA8DPQ0D2H9 430 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 EFEMP1Q12805 493 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 EML3Q32P44 896 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 BSPRYQ5W0U4 402 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 BTBD8Q5XKL5 378 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 KLHDC10Q6PID8 442 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 RSRC2Q7L4I2 434 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 ZSCAN30Q86W11 494 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 MIB1Q86YT6 1006 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 SCUBE3Q8IX30 993 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 SCML4Q8N228 414 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms