RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 KIAA0895Q8NCT3 520 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 SLC2A14Q8TDB8 520 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 P2RY11Q96G91 374 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 XPO6Q96QU8 1125 aaKnown RBP17.35■□□□□ 0.37
CLN3-255ENST00000637100 MED10Q9BTT4 135 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLN3-255ENST00000637100 HMGXB4Q9UGU5 601 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 SLC27A6Q9Y2P4 619 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 NFE2L3Q9Y4A8 694 aa17.35■□□□□ 0.37
CLN3-255ENST00000637100 K7ELQ4 463 aaPredicted RBP17.34■□□□□ 0.37
CLN3-255ENST00000637100 MAPK13O15264 365 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 P4HA1P13674 534 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 MAPK8P45983 427 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 ZNF132P52740 706 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 ENPEPQ07075 957 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 GPRIN1Q7Z2K8 1008 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 C12orf29Q8N999 325 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 CEP192Q8TEP8 1941 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 MRGPRX1Q96LB2 322 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 NMUR1Q9HB89 426 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 DNAJC17Q9NVM6 304 aaKnown RBP17.34■□□□□ 0.37
CLN3-255ENST00000637100 PCDHA7Q9UN72 937 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 PCDHA5Q9Y5H7 936 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 USP3Q9Y6I4 520 aa17.34■□□□□ 0.37
CLN3-255ENST00000637100 DSPP15924 2871 aaKnown RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 ATXN2Q99700 1313 aaKnown RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 HYAL3O43820 417 aaPredicted RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 PENKP01210 267 aaPredicted RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 SLFN14P0C7P3 912 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 ACO1P21399 889 aaKnown RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 PLA2G4AP47712 749 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 MAP3K7CLP57077 242 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 FAM193AP78312 1265 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 ATL3Q6DD88 541 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 TOGARAM2Q6ZUX3 1019 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 RAB44Q7Z6P3 723 aaPredicted RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 MINDY1Q8N5J2 469 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 DNASE2BQ8WZ79 361 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 ELMO3Q96BJ8 720 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 BBS2Q9BXC9 721 aa17.33■□□□□ 0.36
CLN3-255ENST00000637100 FAM124BQ9H5Z6 455 aaPredicted RBP17.33■□□□□ 0.36
CLN3-255ENST00000637100 SPAARA0A1B0GVQ0 90 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 NPC1O15118 1278 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 ACTN4O43707 911 aaKnown RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 OPHN1O60890 802 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 CFIP05156 583 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 FAM200BP0CF97 657 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 IRF1P10914 325 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 HOXB3P14651 431 aaPredicted RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 PSEN1P49768 467 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 KIF11P52732 1056 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 SIM1P81133 766 aaPredicted RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 NFIL3Q16649 462 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 SDE2Q6IQ49 451 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 SCARA5Q6ZMJ2 495 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 CCDC186Q7Z3E2 898 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 SCD5Q86SK9 330 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 CHPFQ8IZ52 775 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 RBBP8NLQ8NC74 664 aaPredicted RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 TWNKQ96RR1 684 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 CYP3A43Q9HB55 503 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 FSCN3Q9NQT6 498 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.32■□□□□ 0.366e-9■■■■■ 134.6
CLN3-255ENST00000637100 CLIC5Q9NZA1 410 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 USP36Q9P275 1121 aaKnown RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 DNMT3LQ9UJW3 386 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 LSM7Q9UK45 103 aaKnown RBP17.32■□□□□ 0.36
CLN3-255ENST00000637100 RCOR1Q9UKL0 485 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 KLK13Q9UKR3 277 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 TRAF3IP3Q9Y228 551 aa17.32■□□□□ 0.36
CLN3-255ENST00000637100 WDFY3Q8IZQ1 3526 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 NEDD8-MDP1E9PL57 170 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 STC2O76061 302 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 IGLV3-19P01714 112 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 KLKB1P03952 638 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 SYPP08247 313 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 WASP42768 502 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 AFMP43652 599 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 DGKGP49619 791 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 GOLGA8FQ08AF8 430 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 GOLGA8DPQ0D2H9 430 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 ZNF423Q2M1K9 1284 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 HDDC3Q8N4P3 179 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 TRIML1Q8N9V2 468 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 FOXJ1Q92949 421 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 FAXDC2Q96IV6 333 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 HSPA12BQ96MM6 686 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 ITM2CQ9NQX7 267 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 FAM49BQ9NUQ9 324 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 FAM13BQ9NYF5 915 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 WSB2Q9NYS7 404 aaPredicted RBP17.31■□□□□ 0.36
CLN3-255ENST00000637100 SUSD2Q9UGT4 822 aa17.31■□□□□ 0.36
CLN3-255ENST00000637100 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
CLN3-255ENST00000637100 ADAMTS9Q9P2N4 1935 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 A0A1W2PQH9 124 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 CYP26A1O43174 497 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 HLA-DRAP01903 254 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 NR3C1P04150 777 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 MYL1P05976 194 aa17.3■□□□□ 0.36
CLN3-255ENST00000637100 RARGP13631 454 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms