RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMEM191CA6NGB0 347 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 F8W8V4 182 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 MAGEB2O15479 319 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 GMNNO75496 209 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 GARTP22102 1010 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 KDELC2Q7Z4H8 507 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 CLVS1Q8IUQ0 354 aaPredicted RBP11.4□□□□□ -0.58
CLN3-244ENST00000636147 ZFAND2BQ8WV99 257 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 FAM210AQ96ND0 272 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 APOL2Q9BQE5 337 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 TMEM79Q9BSE2 394 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 NRDE2Q9H7Z3 1164 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 PICK1Q9NRD5 415 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 KRT82Q9NSB4 513 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 SLC39A10Q9ULF5 831 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 FER1L4A9Z1Z3 1794 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 LRP6O75581 1613 aa11.4□□□□□ -0.58
CLN3-244ENST00000636147 GLRA3O75311 464 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 UNGP13051 313 aaPredicted RBP11.4□□□□□ -0.59
CLN3-244ENST00000636147 KLRC2P26717 231 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 IL1RL1Q01638 556 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 SPP2Q13103 211 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 ATP1A4Q13733 1029 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 C15orf59Q2T9L4 293 aaPredicted RBP11.4□□□□□ -0.59
CLN3-244ENST00000636147 MON1BQ7L1V2 547 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 MYLK4Q86YV6 388 aaPredicted RBP11.4□□□□□ -0.59
CLN3-244ENST00000636147 KLHL23Q8NBE8 558 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 OR6B3Q8NGW1 331 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 SLC44A1Q8WWI5 657 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 RXFP2Q8WXD0 754 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 TCF7L2Q9NQB0 619 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 ZNF302Q9NR11 478 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 BFARQ9NZS9 450 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 DOLKQ9UPQ8 538 aa11.4□□□□□ -0.59
CLN3-244ENST00000636147 TDRKHQ9Y2W6 561 aaKnown RBP11.4□□□□□ -0.59
CLN3-244ENST00000636147 MYOCOSA0A1B0GUC4 107 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 WDR27A2RRH5 827 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 SMAPO00193 183 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 SERPINA6P08185 405 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 TMED10P49755 219 aaKnown RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 SNX16P57768 344 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 SFT2D3Q587I9 215 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 HABP4Q5JVS0 413 aaKnown RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 OR52E8Q6IFG1 317 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 C4orf19Q8IY42 314 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 LRRC71Q8N4P6 559 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 KYQ8NBH2 561 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 TMEM39BQ9GZU3 492 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 PLLPQ9Y342 182 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 HBS1LQ9Y450 684 aaKnown RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 CLUHO75153 1309 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 MYPNQ86TC9 1320 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 SERPINE1P05121 402 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 ITGA2BP08514 1039 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 THRAP10827 490 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 MLH1P40692 756 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 SLC12A1Q13621 1099 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 TAF5Q15542 800 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 FAM47CQ5HY64 1035 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 DENND1BQ6P3S1 775 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 TTC33Q6PID6 262 aaPredicted RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 KBTBD2Q8IY47 623 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 DDI1Q8WTU0 396 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 GOLGA8TH3BQL2 631 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 APOC4-APOC2K7ER74 178 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 APOC2P02655 101 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 HSPA8P11142 646 aaKnown RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 GPD1P21695 349 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 MAP4P27816 1152 aaKnown RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 CDKN2BP42772 138 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 CCNG1P51959 295 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 NFIL3Q16649 462 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 ZACNQ401N2 412 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 XKR3Q5GH77 459 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 C6orf52Q5T4I8 152 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 DPY19L2Q6NUT2 758 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 GMCL1P1Q8NEA9 526 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 BHLHE22Q8NFJ8 381 aaPredicted RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 MBOAT7Q96N66 472 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 ILKAPQ9H0C8 392 aaPredicted RBP11.39□□□□□ -0.59
CLN3-244ENST00000636147 ING2Q9H160 280 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 TMCO1Q9UM00 188 aa11.39□□□□□ -0.59
CLN3-244ENST00000636147 ATP8B3O60423 1300 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 HMGCRP04035 888 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 MMP10P09238 476 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 AVPR1AP37288 418 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 ANO4Q32M45 955 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 TMEM63BQ5T3F8 832 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 PLEKHA7Q6IQ23 1121 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 AMIGO2Q86SJ2 522 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 PCDH20Q8N6Y1 951 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 PHC3Q8NDX5 983 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 NSUN6Q8TEA1 469 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 BSNDQ8WZ55 320 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 MRPL4Q9BYD3 311 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 DNAI2Q9GZS0 605 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 DRC3Q9H069 523 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 DNAAF2Q9NVR5 837 aaKnown RBP11.38□□□□□ -0.59
CLN3-244ENST00000636147 SNCAIPQ9Y6H5 919 aa11.38□□□□□ -0.59
CLN3-244ENST00000636147 CNTNAP4Q9C0A0 1308 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms