RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FAM47DPA6NHR8 397 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 CREB3O43889 395 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 METTL18O95568 372 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 KCNE1P15382 129 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 STIP1P31948 543 aaKnown RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 CACNA2D1P54289 1103 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 PDK2Q15119 407 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 SLC1A5Q15758 541 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 SAPCD2Q86UD0 394 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 CKAP2Q8WWK9 683 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 SMC6Q96SB8 1091 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 LGMNQ99538 433 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 TSPYL2Q9H2G4 693 aaPredicted RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 AGO3Q9H9G7 860 aaKnown RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 ETNK1Q9HBU6 452 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 TMEM30AQ9NV96 361 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 MYBPHLA2RUH7 354 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 CHRNA1P02708 482 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 PTPN1P18031 435 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 AXLP30530 894 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SULT1E1P49888 294 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SCNN1GP51170 649 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 GEMIN4P57678 1058 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 RNASELQ05823 741 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 KBTBD12Q3ZCT8 623 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SV2CQ496J9 727 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 KCNT2Q6UVM3 1135 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 ARHGEF18Q6ZSZ5 1173 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 PRPF39Q86UA1 669 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 SPATS2Q86XZ4 545 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 ANKS4BQ8N8V4 417 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 ATP11CQ8NB49 1132 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 CCT6BQ92526 530 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 GDAP2Q9NXN4 497 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 DDX43Q9NXZ2 648 aaKnown RBP11.03□□□□□ -0.64
CUX1-221ENST00000622516 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■■■□ 19.4
CUX1-221ENST00000622516 TCRBV9S1A1TA0A576 114 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 DPYSL4O14531 572 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SNX3O60493 162 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 POMCP01189 267 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 AMHP03971 560 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SETSIPP0DME0 302 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 KCNJ11Q14654 390 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SLC26A9Q7LBE3 791 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 SENP8Q96LD8 212 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 CSPG4P5Q96PW8 444 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 APBA2Q99767 749 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 CCDC134Q9H6E4 229 aa11.03□□□□□ -0.64
CUX1-221ENST00000622516 TTC3P53804 2025 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 NUP205Q92621 2012 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 DCAF8L1A6NGE4 600 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 CCT8L1PA6NM43 557 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 NRP1O14786 923 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 AKR1A1P14550 325 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 TTC31Q49AM3 519 aaPredicted RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 XKR4Q5GH76 650 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 SLC9A4Q6AI14 798 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 CGB2Q6NT52 195 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 RGMBQ6NW40 437 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 CLEC20AQ6ZU45 233 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 CEP128Q6ZU80 1094 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 YTHDF3Q7Z739 585 aaKnown RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 CTAGE3PQ8IX95 158 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 STK32AQ8WU08 396 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 TRIB2Q92519 343 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 TNIP3Q96KP6 325 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 PPP1R10Q96QC0 940 aaKnown RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 C11orf84Q9BUA3 381 aaPredicted RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 LRRC4Q9HBW1 653 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 CRTAC1Q9NQ79 661 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 KRT82Q9NSB4 513 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.64
CUX1-221ENST00000622516 PSMC3IPQ9P2W1 217 aaPredicted RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 ZMYND8Q9ULU4 1186 aaPredicted RBP11.02□□□□□ -0.64
CUX1-221ENST00000622516 MANSC4A6NHS7 340 aaPredicted RBP11.02□□□□□ -0.65
CUX1-221ENST00000622516 TTC36A6NLP5 189 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 M0QYT0 321 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 MDM4O15151 490 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 TAC1P20366 129 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 MSH2P43246 934 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 SCTRP47872 440 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 TKTL1P51854 596 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 CRADDP78560 199 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 MRPS6P82932 125 aaKnown RBP11.02□□□□□ -0.65
CUX1-221ENST00000622516 BSPRYQ5W0U4 402 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 MPP5Q8N3R9 675 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 PGLYRP2Q96PD5 576 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 MYCBPQ99417 103 aaPredicted RBP11.02□□□□□ -0.65
CUX1-221ENST00000622516 KATNAL1Q9BW62 490 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 DUSP16Q9BY84 665 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 FRMD8P1Q9BZ68 369 aaPredicted RBP11.02□□□□□ -0.65
CUX1-221ENST00000622516 BPTFQ12830 3046 aa11.02□□□□□ -0.65
CUX1-221ENST00000622516 ARL5CA6NH57 179 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 F8W810 466 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 M0QZ92 97 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 XPOTO43592 962 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 UGT1A9O60656 530 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 USP17L7P0C7H9 530 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 GNAT1P11488 350 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms