RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ZNF48Q96MX3 618 aaPredicted RBP6.06□□□□□ -1.44
VPS29-212ENST00000621131 CPNE7Q9UBL6 633 aa6.06□□□□□ -1.44
VPS29-212ENST00000621131 NOB1Q9ULX3 412 aaKnown RBP6.06□□□□□ -1.44
VPS29-212ENST00000621131 DRG1Q9Y295 367 aaKnown RBP6.06□□□□□ -1.44
VPS29-212ENST00000621131 CDY1Q9Y6F8 540 aa6.06□□□□□ -1.44
VPS29-212ENST00000621131 QRICH2Q9H0J4 1663 aa6.06□□□□□ -1.44
VPS29-212ENST00000621131 STRCP1A6NGW2 1772 aa6.06□□□□□ -1.44
VPS29-212ENST00000621131 ADGRF5Q8IZF2 1346 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 CACNA1IQ9P0X4 2223 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 NLRP1Q9C000 1473 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 TRIM43BA6NCK2 446 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 BCAR3O75815 825 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 U2AF1L5P0DN76 240 aaPredicted RBP6.05□□□□□ -1.44
VPS29-212ENST00000621131 U2AF1Q01081 240 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS29-212ENST00000621131 IDI1Q13907 227 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 LRRC41Q15345 812 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 CNN3Q15417 329 aaKnown RBP6.05□□□□□ -1.44
VPS29-212ENST00000621131 FAM102BQ5T8I3 360 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 APOA5Q6Q788 366 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 SFTPA1Q8IWL2 248 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 SPARTQ8N0X7 666 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 ZNF366Q8N895 744 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 DNAJB14Q8TBM8 379 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 ADAMTS18Q8TE60 1221 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 SPSB4Q96A44 273 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 TRIM43Q96BQ3 446 aaPredicted RBP6.05□□□□□ -1.44
VPS29-212ENST00000621131 TFCP2L1Q9NZI6 479 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 PAXBP1Q9Y5B6 917 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 LRP5O75197 1615 aa6.05□□□□□ -1.44
VPS29-212ENST00000621131 ZNF521Q96K83 1311 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 CENPJQ9HC77 1338 aaPredicted RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 KCNU1A8MYU2 1149 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 PYCARD-AS1I3L0S3 204 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 MARCH6O60337 910 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 PRKAR1BP31321 381 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 UQCRC1P31930 480 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 ARHGAP25P42331 645 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 NPY5RQ15761 445 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 NFE2Q16621 373 aaPredicted RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 FAM187BQ17R55 369 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 INSCQ1MX18 579 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 CERKLQ49MI3 558 aaPredicted RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 MINDY4Q4G0A6 757 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 ODR4Q5SWX8 454 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 SERPINA13PQ6UXR4 307 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 KCTD20Q7Z5Y7 419 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 RAB11FIP4Q86YS3 637 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 CHPFQ8IZ52 775 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 NMD3Q96D46 503 aaKnown RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 ZC3H10Q96K80 434 aaKnown RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 FCRL4Q96PJ5 515 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 SPRTNQ9H040 489 aaPredicted RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 C1orf112Q9NSG2 853 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 FAM135BQ49AJ0 1406 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 RIMS2Q9UQ26 1411 aa6.04□□□□□ -1.44
VPS29-212ENST00000621131 ARHGEF28Q8N1W1 1705 aaKnown RBP6.04□□□□□ -1.44
VPS29-212ENST00000621131 A2ML1A8K2U0 1454 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 MED14O60244 1454 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 UBR1Q8IWV7 1749 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 CFAP69A5D8W1 941 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 MBD3L4A6NDZ8 208 aaPredicted RBP6.03□□□□□ -1.44
VPS29-212ENST00000621131 MBD3L3A6NE82 208 aaPredicted RBP6.03□□□□□ -1.44
VPS29-212ENST00000621131 A6NNZ2 444 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 ISM1B1AKI9 464 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 FAM227AF5H4B4 570 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 UBE2Q2LH0YL09 131 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 PSMD9O00233 223 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 CES2O00748 559 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 PPEF2O14830 753 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 FRS3O43559 492 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 ITGB6P18564 788 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 TIRAPP58753 221 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 MLC1Q15049 377 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 PLEKHG6Q3KR16 790 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 MIS18BP1Q6P0N0 1132 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 ZNF813Q6ZN06 617 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 ZNF398Q8TD17 642 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 PPP1R9BQ96SB3 815 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 MMS19Q96T76 1030 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 TMEM79Q9BSE2 394 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 WDR26Q9H7D7 661 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 SACM1LQ9NTJ5 587 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 LPAR3Q9UBY5 353 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 TPCN1Q9ULQ1 816 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 SCAF8Q9UPN6 1271 aaKnown RBP6.03□□□□□ -1.44
VPS29-212ENST00000621131 USP22Q9UPT9 525 aa6.03□□□□□ -1.44
VPS29-212ENST00000621131 ADGRB1O14514 1584 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 BTBD19C9JJ37 291 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 M0R3H8 397 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 FCHO1O14526 889 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 CCP110O43303 1012 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 USP1O94782 785 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 MT-CO3P00414 261 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 EPHA3P29320 983 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 SUMO2P61956 95 aaKnown RBP6.02□□□□□ -1.45
VPS29-212ENST00000621131 TIAL1Q01085 375 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS29-212ENST00000621131 LMAN2Q12907 356 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 RALBP1Q15311 655 aa6.02□□□□□ -1.45
VPS29-212ENST00000621131 TRIP6Q15654 476 aaKnown RBP6.02□□□□□ -1.45
VPS29-212ENST00000621131 CNGA2Q16280 664 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms