RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 SLC12A8A0AV02 714 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 PIK3R2O00459 728 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 SERPINC1P01008 464 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 CALCAP01258 141 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 LTFP02788 710 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 CCDC172P0C7W6 258 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 CHRNB1P11230 501 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 ADH5P11766 374 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 HARS2P49590 506 aaKnown RBP20.26■□□□□ 0.83
UPF1-212ENST00000601689 PGFP49763 221 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 CCR3P51677 355 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 SYCP1Q15431 976 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 ANO4Q32M45 955 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 DENND1BQ6P3S1 775 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 CACNA2D4Q7Z3S7 1137 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 SLC47A2Q86VL8 602 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 TMEM35BQ8NCS4 154 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 PRSS33Q8NF86 280 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 PLD4Q96BZ4 506 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 XPO6Q96QU8 1125 aaKnown RBP20.26■□□□□ 0.83
UPF1-212ENST00000601689 CHRDQ9H2X0 955 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 DLGAP2Q9P1A6 1054 aa20.26■□□□□ 0.83
UPF1-212ENST00000601689 YJEFN3A6XGL0 299 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 E7ENQ6 273 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 H0Y858 1186 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 MDM4O15151 490 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 CLCN1P35523 988 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 EIF2DP41214 584 aaKnown RBP20.25■□□□□ 0.83
UPF1-212ENST00000601689 STAT1P42224 750 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 GALK1P51570 392 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 TMEM196Q5HYL7 178 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 ZC3H14Q6PJT7 736 aaKnown RBP20.25■□□□□ 0.83
UPF1-212ENST00000601689 TXNDC11Q6PKC3 985 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 ZNF677Q86XU0 584 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 BBS7Q8IWZ6 715 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 DHX40Q8IX18 779 aaKnown RBP20.25■□□□□ 0.83
UPF1-212ENST00000601689 SCUBE3Q8IX30 993 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 PPP1R13BQ96KQ4 1090 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 ERGIC2Q96RQ1 377 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 SPHK2Q9NRA0 654 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 WDR35Q9P2L0 1181 aa20.25■□□□□ 0.83
UPF1-212ENST00000601689 HBS1LQ9Y450 684 aaKnown RBP20.25■□□□□ 0.83
UPF1-212ENST00000601689 MYOFQ9NZM1 2061 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 OTOL1A6NHN0 477 aaPredicted RBP20.24■□□□□ 0.83
UPF1-212ENST00000601689 F8VZ95 297 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 STC2O76061 302 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 CYBBP04839 570 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 CYP17A1P05093 508 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 HMBSP08397 361 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 NCAM1P13591 858 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 CYP11B1P15538 503 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 PDCLQ13371 301 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 TMEM110Q86TL2 294 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 PASD1Q8IV76 773 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 NDRG1Q92597 394 aaKnown RBP20.24■□□□□ 0.83
UPF1-212ENST00000601689 EDEM1Q92611 657 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 FUCA2Q9BTY2 467 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 NAA15Q9BXJ9 866 aaKnown RBP20.24■□□□□ 0.83
UPF1-212ENST00000601689 SLC4A5Q9BY07 1137 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 ACP6Q9NPH0 428 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 NLRC4Q9NPP4 1024 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 FBXO4Q9UKT5 387 aa20.24■□□□□ 0.83
UPF1-212ENST00000601689 E5RJQ4 531 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 SCAMP3O14828 347 aaKnown RBP20.23■□□□□ 0.83
UPF1-212ENST00000601689 APODP05090 189 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 SOX5P35711 763 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 CXCL12P48061 93 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 RPL34P49207 117 aaKnown RBP20.23■□□□□ 0.83
UPF1-212ENST00000601689 NRLP54845 237 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 ZNF445P59923 1031 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 TCF15Q12870 199 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 ZSCAN23Q3MJ62 389 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 EFHC1Q5JVL4 640 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 LY6G5CQ5SRR4 150 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 TOGARAM2Q6ZUX3 1019 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 ZDHHC17Q8IUH5 632 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 UNC45BQ8IWX7 931 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 SPEM1Q8N4L4 309 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 PNKPQ96T60 521 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 GANQ9H2C0 597 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 POPDC2Q9HBU9 364 aa20.23■□□□□ 0.83
UPF1-212ENST00000601689 AJAP1Q9UKB5 411 aaPredicted RBP20.23■□□□□ 0.83
UPF1-212ENST00000601689 SHISA7A6NL88 538 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 GFPT2O94808 682 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 GLI1P08151 1106 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 ATP1A3P13637 1013 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 CORO1AP31146 461 aaKnown RBP20.22■□□□□ 0.83
UPF1-212ENST00000601689 CCINQ13939 588 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 NUGGCQ68CJ6 796 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 RHBDF2Q6PJF5 856 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 MAMSTRQ6ZN01 415 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 BEND5Q7L4P6 421 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 SERPINB11Q96P15 392 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 BBS2Q9BXC9 721 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 DEC1Q9P2X7 70 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 SFMBT1Q9UHJ3 866 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 SIK3Q9Y2K2 1263 aa20.22■□□□□ 0.83
UPF1-212ENST00000601689 HOXC11O43248 304 aaPredicted RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 LSM8O95777 96 aaKnown RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 PNMA6AP0CW24 399 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms