RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MYO16Q9Y6X6 1858 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 BDP1A6H8Y1 2624 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 HSF2BPO75031 334 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 GSCP56915 257 aaPredicted RBP20.23■□□□□ 0.83
UPF1-209ENST00000600310 C1QBPQ07021 282 aaKnown RBP20.23■□□□□ 0.83
UPF1-209ENST00000600310 EFEMP1Q12805 493 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 GRM2Q14416 872 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 MTF1Q14872 753 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 TAF5Q15542 800 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 MON1BQ7L1V2 547 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 TC2NQ8N9U0 490 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 GKN1Q9NS71 199 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 TAS2R14Q9NYV8 317 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 ADAM22Q9P0K1 906 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 MARCH2Q9P0N8 246 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 WDR35Q9P2L0 1181 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 ADAMTS1Q9UHI8 967 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 RASAL2Q9UJF2 1139 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 STRIP2Q9ULQ0 834 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 DUSP12Q9UNI6 340 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 NAALADL1Q9UQQ1 740 aa20.23■□□□□ 0.83
UPF1-209ENST00000600310 SSU72P8A0A1W2PR75 194 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 CALB1P05937 261 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 SRFP11831 508 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 NCAM1P13591 858 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 COG7P83436 770 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 CDK17Q00537 523 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.22■□□□□ 0.83
UPF1-209ENST00000600310 YAF2Q8IY57 180 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 VCPIP1Q96JH7 1222 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 SLC2A13Q96QE2 648 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.22■□□□□ 0.83
UPF1-209ENST00000600310 SLC2A4RGQ9NR83 387 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 THG1LQ9NWX6 298 aaKnown RBP20.22■□□□□ 0.83
UPF1-209ENST00000600310 CFAP97Q9P2B7 532 aa20.22■□□□□ 0.83
UPF1-209ENST00000600310 NUP210Q8TEM1 1887 aaPredicted RBP20.22■□□□□ 0.83
UPF1-209ENST00000600310 GOLGA6L3A6NEY3 463 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 CAPN9O14815 690 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 ZNF263O14978 683 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 CHADO15335 359 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 NARSO43776 548 aaKnown RBP20.21■□□□□ 0.83
UPF1-209ENST00000600310 COL9A1P20849 921 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 GDI1P31150 447 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 EIF4A3P38919 411 aaKnown RBP20.21■□□□□ 0.83
UPF1-209ENST00000600310 GPC5P78333 572 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 MAPK8IP2Q13387 824 aaPredicted RBP20.21■□□□□ 0.83
UPF1-209ENST00000600310 ARHGAP29Q52LW3 1261 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 FAM102AQ5T9C2 384 aaPredicted RBP20.21■□□□□ 0.83
UPF1-209ENST00000600310 SYPL2Q5VXT5 272 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 MIB1Q86YT6 1006 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 UBALD2Q8IYN6 164 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 MCOLN2Q8IZK6 566 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 DEFB106AQ8N104 65 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 SMOC2Q9H3U7 446 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 GRPEL1Q9HAV7 217 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 SFMBT1Q9UHJ3 866 aa20.21■□□□□ 0.83
UPF1-209ENST00000600310 HBS1LQ9Y450 684 aaKnown RBP20.21■□□□□ 0.83
UPF1-209ENST00000600310 A0A087X0T9 212 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 SLC12A8A0AV02 714 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 E2F8A0AVK6 867 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 TMCO5BA8MYB1 307 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 GOLGA8SH3BPF8 625 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 RTN2O75298 545 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 DAB1O75553 588 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 GRAP2O75791 330 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 FTLP02792 175 aaPredicted RBP20.2■□□□□ 0.82
UPF1-209ENST00000600310 FAM228BP0C875 321 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 DCAF6Q58WW2 860 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 CC2D1AQ6P1N0 951 aaPredicted RBP20.2■□□□□ 0.82
UPF1-209ENST00000600310 ARCQ7LC44 396 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 DQX1Q8TE96 717 aaKnown RBP20.2■□□□□ 0.82
UPF1-209ENST00000600310 CHP1Q99653 195 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 FAM83CQ9BQN1 747 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 ISCUQ9H1K1 167 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 BRD9Q9H8M2 597 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 IMPACTQ9P2X3 320 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 TMEM59LQ9UK28 342 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 SH3BP1Q9Y3L3 701 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 MYO10Q9HD67 2058 aa20.2■□□□□ 0.82
UPF1-209ENST00000600310 ARNTLO00327 626 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 DCXO43602 365 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 GREM1O60565 184 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 STC2O76061 302 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 NOS2P35228 1153 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 KPNA1P52294 538 aaPredicted RBP20.19■□□□□ 0.82
UPF1-209ENST00000600310 ZXDAP98168 799 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 ASTE1Q2TB18 679 aaPredicted RBP20.19■□□□□ 0.82
UPF1-209ENST00000600310 HTR3DQ70Z44 454 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 C3orf20Q8ND61 904 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 TTC16Q8NEE8 873 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 OSCP1Q8WVF1 389 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 IRF7Q92985 503 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 WBP2Q969T9 261 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 TRPV5Q9NQA5 729 aa20.19■□□□□ 0.82
UPF1-209ENST00000600310 C5orf42Q9H799 3197 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 TCRBV5S1A1TA0A578 114 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 IGLV3-25P01717 112 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 IRF1P10914 325 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 MATKP42679 507 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 RNASE9P60153 205 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms