RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PLK2Q9NYY3 685 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 DEC1Q9P2X7 70 aa9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 USP9YO00507 2555 aaPredicted RBP9.16□□□□□ -0.94
SHKBP1-220ENST00000599716 A0A0A0MRY4 1105 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 E2F8A0AVK6 867 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 LRRIQ3A6PVS8 624 aaPredicted RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 ATXN7O15265 892 aaPredicted RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CYP26A1O43174 497 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 HOXC11O43248 304 aaPredicted RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SH3BP5O60239 455 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 GREM1O60565 184 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 TLR5O60602 858 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 PHACTR2O75167 634 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 VNN1O95497 513 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CD59P13987 128 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 ADORA2BP29275 332 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 EIF2DP41214 584 aaKnown RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 TNFRSF4P43489 277 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 MAP3K7CLP57077 242 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 DLG4P78352 724 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SCAPQ12770 1279 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SURF1Q15526 300 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF699Q32M78 642 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 ERICH6BQ5W0A0 696 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 BTBD8Q5XKL5 378 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SHC4Q6S5L8 630 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 KIAA1324Q6UXG2 1013 aaKnown RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CHPFQ8IZ52 775 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 RGL4Q8IZJ4 473 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 TRIML1Q8N9V2 468 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 XXYLT1Q8NBI6 393 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF507Q8TCN5 953 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC2A14Q8TDB8 520 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 IPO4Q8TEX9 1081 aaKnown RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 NACA2Q9H009 215 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC32A1Q9H598 525 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC86Q9H6F5 360 aaKnown RBP9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CAPN10Q9HC96 672 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 CD248Q9HCU0 757 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 KBTBD4Q9NVX7 518 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC6A14Q9UN76 642 aa9.15□□□□□ -0.94
SHKBP1-220ENST00000599716 NUMA1Q14980 2115 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 POLQO75417 2590 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 SETD2Q9BYW2 2564 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 PLXNB3Q9ULL4 1909 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 CAPN8A6NHC0 703 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 KIAA0391O15091 583 aaKnown RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 EIF3DO15371 548 aaKnown RBP eCLIP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 AP5Z1O43299 807 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 EXOC3O60645 756 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 OPHN1O60890 802 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 RTN3O95197 1032 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 SERPINF2P08697 491 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 TYRP14679 529 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 PFKLP17858 780 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 NTSR1P30989 418 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 AFMP43652 599 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 PPP3CCP48454 512 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 GFPT1Q06210 699 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 CUL4BQ13620 913 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 DUOXA1Q1HG43 343 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 PEAR1Q5VY43 1037 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 GRAMD4Q6IC98 578 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 DDX42Q86XP3 938 aaKnown RBP eCLIP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 HDDC3Q8N4P3 179 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 LINC00301Q8NCQ3 95 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 CCDC26Q8TAB7 109 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 TWNKQ96RR1 684 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 BBS2Q9BXC9 721 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 TNMDQ9H2S6 317 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 NMUR1Q9HB89 426 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 IL21RQ9HBE5 538 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 DMAP1Q9NPF5 467 aaPredicted RBP9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 EHD2Q9NZN4 543 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 TBC1D14Q9P2M4 693 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 RAXQ9Y2V3 346 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 SLCO1B1Q9Y6L6 691 aa9.14□□□□□ -0.95
SHKBP1-220ENST00000599716 CENPEQ02224 2701 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 A0A1W2PQH9 124 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 ARHGAP33O14559 1287 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 POLR2DO15514 142 aaKnown RBP9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 HMBSP08397 361 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 ZDHHC11BP0C7U3 371 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 RDXP35241 583 aaKnown RBP9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 NASPP49321 788 aaPredicted RBP9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 NDST1P52848 882 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 EHHADHQ08426 723 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 NCOA4Q13772 614 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 PLEKHG6Q3KR16 790 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 HSF5Q4G112 596 aaPredicted RBP9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF667Q5HYK9 610 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 STXBP4Q6ZWJ1 553 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 PDZD8Q8NEN9 1154 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 SMARCD1Q96GM5 515 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 MRGPRX1Q96LB2 322 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 CEP295NLQ96MC4 621 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 KLF16Q9BXK1 252 aaPredicted RBP9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 MIR1-1HGQ9H1L0 117 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 UPF2Q9HAU5 1272 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms