RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 MSRB2Q9Y3D2 182 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 ATXN2Q99700 1313 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 FAM221BA6H8Z2 402 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 LRRIQ3A6PVS8 624 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 GFRA2O00451 464 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 PDXKO00764 312 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 ARHGAP33O14559 1287 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 HYAL3O43820 417 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 OPHN1O60890 802 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 RHOBTB3O94955 611 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 SYPP08247 313 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 IRF1P10914 325 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 ATP5C1P36542 298 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 DLG4P78352 724 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 SIM1P81133 766 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 GOLGA8FQ08AF8 430 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 GOLGA8DPQ0D2H9 430 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 C1orf220Q5T0J3 134 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 EGFLAMQ63HQ2 1017 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 KLHDC10Q6PID8 442 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 ACOT1Q86TX2 421 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 UNC93AQ86WB7 457 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 MIB1Q86YT6 1006 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 CHPFQ8IZ52 775 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 IPO4Q8TEX9 1081 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 TAF4BQ92750 862 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 ELMO3Q96BJ8 720 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 GABRG3Q99928 467 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 GTPBP2Q9BX10 602 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 BBS2Q9BXC9 721 aa13.21□□□□□ -0.29
TRIM28-212ENST00000597995 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.21□□□□□ -0.291e-10■■■■■ 28.7
TRIM28-212ENST00000597995 DNAJC17Q9NVM6 304 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 LSM7Q9UK45 103 aaKnown RBP13.21□□□□□ -0.29
TRIM28-212ENST00000597995 SPAARA0A1B0GVQ0 90 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 SRRM3A6NNA2 597 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 TRIM24O15164 1050 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 BEST1O76090 585 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 VNN1O95497 513 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 NR3C1P04150 777 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 TYRP14679 529 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 WASP42768 502 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 PGFP49763 221 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 NDST1P52848 882 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 MAP3K7CLP57077 242 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 SLC14A1Q13336 389 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 BECN1Q14457 450 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 ZACNQ401N2 412 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 SLC41A1Q8IVJ1 513 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 FMR1NBQ8N0W7 255 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 MINDY1Q8N5J2 469 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 DEFB119Q8N690 84 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 SLC2A14Q8TDB8 520 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 ZCCHC14Q8WYQ9 949 aaKnown RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 ZNF419Q96HQ0 510 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 FAM124BQ9H5Z6 455 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 DNAAF2Q9NVR5 837 aaKnown RBP13.2□□□□□ -0.3
TRIM28-212ENST00000597995 MAPK8IP1Q9UQF2 711 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 SCML2Q9UQR0 700 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 TRAF3IP3Q9Y228 551 aa13.2□□□□□ -0.3
TRIM28-212ENST00000597995 ASPMQ8IZT6 3477 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 PRRT4C9JH25 899 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 NEDD8-MDP1E9PL57 170 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 IKBKBO14920 756 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 TBX18O95935 607 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 CISD3P0C7P0 127 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 FAM200BP0CF97 657 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 CD59P13987 128 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 CCDC130P13994 396 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 NDUFV2P19404 249 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 TRIM21P19474 475 aaKnown RBP13.19□□□□□ -0.3
TRIM28-212ENST00000597995 PLA2G4AP47712 749 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 ZNF423Q2M1K9 1284 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 SYCP2LQ5T4T6 812 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 KIAA1211LQ6NV74 962 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 SCARA5Q6ZMJ2 495 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 METTL3Q86U44 580 aaKnown RBP13.19□□□□□ -0.3
TRIM28-212ENST00000597995 ZNF276Q8N554 614 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 TRIML1Q8N9V2 468 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 ENGASEQ8NFI3 743 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 TMC2Q8TDI7 906 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 FOXJ1Q92949 421 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 MRGPRX1Q96LB2 322 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 HSPA12BQ96MM6 686 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 ACOX2Q99424 681 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 HNRNPABQ99729 332 aaKnown RBP13.19□□□□□ -0.3
TRIM28-212ENST00000597995 PNPLA8Q9NP80 782 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 FSCN3Q9NQT6 498 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 SUSD2Q9UGT4 822 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 FBXO10Q9UK96 956 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 KLK13Q9UKR3 277 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 PCDHA5Q9Y5H7 936 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 MYH10P35580 1976 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 PCDH15Q96QU1 1955 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 AKAP13Q12802 2813 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 ADAMTS9Q9P2N4 1935 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 SPEGQ15772 3267 aa13.19□□□□□ -0.3
TRIM28-212ENST00000597995 HHLA1C9JL84 531 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 NDUFS2O75306 463 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 CLSTN1O94985 981 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 ASS1P00966 412 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms