RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MRFAP1Q9Y605 127 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 SPDYE4A6NLX3 237 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 FANCGO15287 622 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 XYLBO75191 536 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 CSPG5O95196 566 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 HNRNPA1P09651 372 aaKnown RBP eCLIP15.89■□□□□ 0.13
TRIM28-209ENST00000597423 SLC2A3P11169 496 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 HOXA9P31269 272 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 CXCR5P32302 372 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 IRS1P35568 1242 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 TAS2R40P59535 323 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 TUBB4BP68371 445 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 MLLT1Q03111 559 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-209ENST00000597423 NME3Q13232 169 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 MTMR3Q13615 1198 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 SYPL2Q5VXT5 272 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 KCTD6Q8NC69 237 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 ACTRT1Q8TDG2 376 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 TEKT4Q8WW24 435 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 MAIP1Q8WWC4 291 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 KRT35Q92764 455 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 RPGRIP1Q96KN7 1286 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 GCNAQ96QF7 691 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 PSMB7Q99436 277 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 NACA2Q9H009 215 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 ZWILCHQ9H900 591 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 L2HGDHQ9H9P8 463 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 DDIT4Q9NX09 232 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.89■□□□□ 0.13
TRIM28-209ENST00000597423 SLC12A6Q9UHW9 1150 aa15.89■□□□□ 0.13
TRIM28-209ENST00000597423 SRGAP2O75044 1071 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ZMYND10O75800 440 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ZDHHC11BP0C7U3 371 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 HMGA1P17096 107 aaKnown RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 GJC1P36383 396 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 HDAC4P56524 1084 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 SLC25A11Q02978 314 aaKnown RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 PDK2Q15119 407 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 C10orf120Q5SQS8 335 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 HECTD3Q5T447 861 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ERMARDQ5T6L9 678 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 MSANTD2Q6P1R3 559 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 SPRED2Q7Z698 418 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 CCDC50Q8IVM0 306 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ARFGAP1Q8N6T3 406 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 LEMD2Q8NC56 503 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 CMASQ8NFW8 434 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 DQX1Q8TE96 717 aaKnown RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 SLC22A17Q8WUG5 538 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 MRPL38Q96DV4 380 aaKnown RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 SERPINB11Q96P15 392 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 MAK16Q9BXY0 300 aaKnown RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 SMOC2Q9H3U7 446 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 WDCPQ9H6R7 721 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 NMUR1Q9HB89 426 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ZDHHC7Q9NXF8 308 aa15.88■□□□□ 0.13
TRIM28-209ENST00000597423 TTC7AQ9ULT0 858 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF840PA6NDX5 716 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 PGRMC1O00264 195 aaKnown RBP15.87■□□□□ 0.13
TRIM28-209ENST00000597423 MDM4O15151 490 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 KRT1P04264 644 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 SRGAP2BP0DMP2 458 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 PTPN2P17706 415 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 CCR1P32246 355 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 ATP5C1P36542 298 aaKnown RBP15.87■□□□□ 0.13
TRIM28-209ENST00000597423 CXCR3P49682 368 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 TUBP50607 506 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 NNTQ13423 1086 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 KRT81Q14533 505 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 BRMS1LQ5PSV4 323 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 ACBD5Q5T8D3 534 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-209ENST00000597423 SH3PXD2AQ5TCZ1 1133 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 KLHDC10Q6PID8 442 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 BNIPLQ7Z465 357 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 CREG2Q8IUH2 290 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 RASGEF1CQ8N431 466 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 COG1Q8WTW3 980 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 ALG3Q92685 438 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 CAPZA3Q96KX2 299 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 MAN1C1Q9NR34 630 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 DNMT3LQ9UJW3 386 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 MYH10P35580 1976 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 KIAA1671Q9BY89 1806 aa15.87■□□□□ 0.13
TRIM28-209ENST00000597423 NLRC5Q86WI3 1866 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 SYNJ2BP-COX16A0A087WUM0 186 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CTAGE15A4D2H0 777 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF185O15231 689 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 POU2F2P09086 479 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CTAGE8P0CG41 777 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 RARAP10276 462 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 PYGMP11217 842 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 PFKLP17858 780 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CDC25CP30307 473 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 ADRA1BP35368 520 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF135P52742 658 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-209ENST00000597423 PPP2R5EQ16537 467 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 DUSP6Q16828 381 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 LONRF2Q1L5Z9 754 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 LRIT3Q3SXY7 679 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms