RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PNPOQ9NVS9 261 aa2.14□□□□□ -2.07
SMCHD1-211ENST00000584897 GPRC5BQ9NZH0 403 aa2.14□□□□□ -2.07
SMCHD1-211ENST00000584897 PCDHA1Q9Y5I3 950 aa2.14□□□□□ -2.07
SMCHD1-211ENST00000584897 TAF1P21675 1872 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 UBE2QL1A1L167 161 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PRSS38A1L453 326 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PROB1E7EW31 1015 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ADAMTS3O15072 1205 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 FFAR2O15552 330 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ENDOD1O94919 500 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CBSLP0DN79 551 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TNFAIP3P21580 790 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CNTFP26441 200 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PTPN7P35236 360 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CBSP35520 551 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 KRT20P35900 424 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PRIM2P49643 509 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MALLQ13021 153 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC12A1Q13621 1099 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RRP1BQ14684 758 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ARL13BQ3SXY8 428 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RABL6Q3YEC7 729 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ATAT1Q5SQI0 421 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 OTUD7BQ6GQQ9 843 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MICALCLQ6ZW33 695 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SDR16C5Q8N3Y7 309 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TRAPPC12Q8WVT3 735 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SMG7Q92540 1137 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 EXTL1Q92935 676 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 FAM167AQ96KS9 214 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RPL10LQ96L21 214 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TBATAQ96M53 351 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PACSIN1Q9BY11 444 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TOR3AQ9H497 397 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 GREM2Q9H772 168 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ZMAT4Q9H898 229 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SMURF1Q9HCE7 757 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 GALNT9Q9HCQ5 603 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PIH1D1Q9NWS0 290 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 DACT1Q9NYF0 836 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TMOD2Q9NZR1 351 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PADI4Q9UM07 663 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SUFUQ9UMX1 484 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC45A1Q9Y2W3 748 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ATRNL1Q5VV63 1379 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SPTBN5Q9NRC6 3674 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 COL11A1P12107 1806 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ZNF561-AS1K7EIQ3 104 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PJA2O43164 708 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 FOXS1O43638 330 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RGS10O43665 173 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ERN1O75460 977 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 IL18RAPO95256 599 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CELF2O95319 508 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CSF1RP07333 972 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RAP2AP10114 183 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC5A1P13866 664 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MCCP23508 829 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 GPR3P46089 330 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 APBA1Q02410 837 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SREBF2Q12772 1141 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RAB32Q13637 225 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PDCD1Q15116 288 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CAVIN4Q5BKX8 364 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PITRM1Q5JRX3 1037 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MAEAQ7L5Y9 396 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 NKAIN3Q8N8D7 197 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SH3RF2Q8TEC5 729 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 AFG1LQ8WV93 481 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RIN2Q8WYP3 895 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TMEM176AQ96HP8 235 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SPATA17Q96L03 361 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 DPYSL5Q9BPU6 564 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 NAA15Q9BXJ9 866 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TMEM60Q9H2L4 133 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 BRD9Q9H8M2 597 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ZNF212Q9UDV6 495 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PCDHA6Q9UN73 950 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RUVBL1Q9Y265 456 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MTO1Q9Y2Z2 717 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ABCC4O15439 1325 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MYPNQ86TC9 1320 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 EIF3FO00303 357 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PODXLO00592 558 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TIMM44O43615 452 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TUSC2O75896 110 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SCAF4O95104 1147 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PYGLP06737 847 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PAFAH1B1P43034 410 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 KIR2DL3P43628 341 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 MANFP55145 182 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SUMO3P55854 103 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 TRPC3Q13507 836 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 IL10RAQ13651 578 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SEC23AQ15436 765 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 CCDC57Q2TAC2 916 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SUMO4Q6EEV6 95 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 APOA5Q6Q788 366 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 LAYNQ6UX15 382 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 KCNK18Q7Z418 384 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms