RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 KRT82Q9NSB4 513 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 GPATCH2LQ9NWQ4 482 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 AP4E1Q9UPM8 1137 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.56■■□□□ 1.36
CCDC47-204ENST00000582252 CASTOR2A6NHX0 329 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 SULT1E1P49888 294 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 GDF10P55107 478 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 YWHAZP63104 245 aaKnown RBP23.56■■□□□ 1.36
CCDC47-204ENST00000582252 UBAP2Q5T6F2 1119 aaKnown RBP23.56■■□□□ 1.36
CCDC47-204ENST00000582252 UNC45BQ8IWX7 931 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 RNF169Q8NCN4 708 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 CENPTQ96BT3 561 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 DHX35Q9H5Z1 703 aaKnown RBP23.56■■□□□ 1.36
CCDC47-204ENST00000582252 PPCSQ9HAB8 311 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 LRRC4CQ9HCJ2 640 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 TBX21Q9UL17 535 aa23.56■■□□□ 1.36
CCDC47-204ENST00000582252 CLDN5O00501 218 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 MMP13P45452 471 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 SLCO1A2P46721 670 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 ADCY1Q08828 1119 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 HIF1AQ16665 826 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 LONRF1Q17RB8 773 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 PPP6R3Q5H9R7 873 aaPredicted RBP23.55■■□□□ 1.36
CCDC47-204ENST00000582252 C1orf228Q6PIY5 440 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 C4orf22Q6V702 233 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 PAQR9Q6ZVX9 377 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 FAM35AQ86V20 835 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 DEFB106AQ8N104 65 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 FAM71DQ8N9W8 422 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 C9orf72Q96LT7 481 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 PWWP2AQ96N64 755 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 CRTAC1Q9NQ79 661 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 PAK5Q9P286 719 aa23.55■■□□□ 1.36
CCDC47-204ENST00000582252 RCOR3Q9P2K3 495 aaPredicted RBP23.55■■□□□ 1.36
CCDC47-204ENST00000582252 ALOX15BO15296 676 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 NBNO60934 754 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 CDH16O75309 829 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 AP1G2O75843 785 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 CLTBP09497 229 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 IL4RP24394 825 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 CYP2F1P24903 491 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 L1CAMP32004 1257 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 NPNTQ6UXI9 565 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 PPP1R21Q6ZMI0 780 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 ZC3H18Q86VM9 953 aaKnown RBP23.54■■□□□ 1.36
CCDC47-204ENST00000582252 CDKL3Q8IVW4 592 aaPredicted RBP23.54■■□□□ 1.36
CCDC47-204ENST00000582252 MYCBPAPQ8TBZ2 947 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 SELENOSQ9BQE4 189 aa23.54■■□□□ 1.36
CCDC47-204ENST00000582252 MKI67P46013 3256 aaKnown RBP23.54■■□□□ 1.36
CCDC47-204ENST00000582252 BCLAF3A2AJT9 711 aaKnown RBP23.53■■□□□ 1.36
CCDC47-204ENST00000582252 ARL4AP40617 200 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 NR2C2P49116 596 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 MAP3K7CLP57077 242 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 TUSC3Q13454 348 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 CA9Q16790 459 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 LRRC26Q2I0M4 334 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 PLEKHG4Q58EX7 1191 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 PQLC3Q8N755 202 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 NAT8LQ8N9F0 302 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 PCDH19Q8TAB3 1148 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 CPT1BQ92523 772 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 APBB2Q92870 758 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 SMARCD1Q96GM5 515 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 NRDE2Q9H7Z3 1164 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 POPDC2Q9HBU9 364 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 CNGB3Q9NQW8 809 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 RGS18Q9NS28 235 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 TMEM39AQ9NV64 488 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 LGALS13Q9UHV8 139 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 TSC2P49815 1807 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 NDUFAB1O14561 156 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 ZBED1O96006 694 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 CYP11A1P05108 521 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 PHBP35232 272 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 AFF1P51825 1210 aaKnown RBP23.53■■□□□ 1.36
CCDC47-204ENST00000582252 TKTL1P51854 596 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 XRCC4Q13426 336 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 BZW1Q7L1Q6 419 aaKnown RBP23.53■■□□□ 1.36
CCDC47-204ENST00000582252 C3orf58Q8NDZ4 430 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 SEPT8Q92599 483 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 RTP4Q96DX8 246 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 SLC2A13Q96QE2 648 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 FRMD8Q9BZ67 464 aaPredicted RBP23.53■■□□□ 1.36
CCDC47-204ENST00000582252 PPP1R12CQ9BZL4 782 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 CACNG4Q9UBN1 327 aa23.53■■□□□ 1.36
CCDC47-204ENST00000582252 MICAL3Q7RTP6 2002 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 TFE3P19532 575 aaPredicted RBP23.52■■□□□ 1.36
CCDC47-204ENST00000582252 IFI35P80217 286 aaPredicted RBP23.52■■□□□ 1.36
CCDC47-204ENST00000582252 BASP1P80723 227 aaKnown RBP23.52■■□□□ 1.36
CCDC47-204ENST00000582252 PDIA2Q13087 525 aaKnown RBP23.52■■□□□ 1.36
CCDC47-204ENST00000582252 GPNMBQ14956 572 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 TIGD5Q53EQ6 642 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 DCAF6Q58WW2 860 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 KIAA0319Q5VV43 1072 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 SLC24A5Q71RS6 500 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 ECHDC2Q86YB7 292 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 ZBED8Q8IZ13 594 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 PCED1BQ96HM7 432 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 ACBD6Q9BR61 282 aa23.52■■□□□ 1.36
CCDC47-204ENST00000582252 RRN3Q9NYV6 651 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms