RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DYNLT1P63172 113 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CUL1Q13616 776 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 BTG3Q14201 252 aaPredicted RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 PDK2Q15119 407 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CCNG2Q16589 344 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ERMARDQ5T6L9 678 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 DUPD1Q68J44 220 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 PM20D1Q6GTS8 502 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 KCNT2Q6UVM3 1135 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 VSTM1Q6UX27 236 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 RSPO2Q6UXX9 243 aaPredicted RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 BBS12Q6ZW61 710 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ANKS3Q6ZW76 656 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 UBE2Q1Q7Z7E8 422 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CMTR2Q8IYT2 770 aaKnown RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 STKLD1Q8NE28 680 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 SCAMP5Q8TAC9 235 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 SLC7A14Q8TBB6 771 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 EDEM1Q92611 657 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 NT5C3BQ969T7 300 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 C8orf48Q96LL4 319 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ZNF558Q96NG5 402 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 KCTD15Q96SI1 283 aaPredicted RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 ERP44Q9BS26 406 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 DHX35Q9H5Z1 703 aaKnown RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 PCDH18Q9HCL0 1135 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 FAM114A2Q9NRY5 505 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 HOMER3Q9NSC5 361 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 EFR3BQ9Y2G0 817 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 SNX24Q9Y343 169 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 UTP11Q9Y3A2 253 aaKnown RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 MRPL42Q9Y6G3 142 aaKnown RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 USP3Q9Y6I4 520 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ANAPC1Q9H1A4 1944 aa10.96□□□□□ -0.66
SS18-217ENST00000580958 GBF1Q92538 1859 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 MTMR11A4FU01 709 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 ZBBXA8MT70 800 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 TRIM66O15016 1216 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 LIASO43766 372 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 BAIAP3O94812 1187 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 VNN2O95498 520 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 ECEL1O95672 775 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 NCAM1P13591 858 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 RDXP35241 583 aaKnown RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 MAGEA11P43364 429 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 SLC5A3P53794 718 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 OTUD4Q01804 1114 aaKnown RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 KRT17Q04695 432 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 DEUP1Q05D60 604 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 NME3Q13232 169 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 HLTFQ14527 1009 aaKnown RBP eCLIP10.95□□□□□ -0.66
SS18-217ENST00000580958 PPP1R7Q15435 360 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 PSMD5Q16401 504 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 DDR2Q16832 855 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 USP41Q3LFD5 358 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 BSPRYQ5W0U4 402 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 SND1Q7KZF4 910 aaKnown RBP eCLIP10.95□□□□□ -0.66
SS18-217ENST00000580958 OTOP2Q7RTS6 562 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 BNIPLQ7Z465 357 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 MTERF4Q7Z6M4 381 aaKnown RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 FAM131BQ86XD5 332 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 MAP7D3Q8IWC1 876 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 RNF168Q8IYW5 571 aaPredicted RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 HS6ST3Q8IZP7 471 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 SLC39A11Q8N1S5 342 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 TTC9BQ8N6N2 239 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 COLGALT1Q8NBJ5 622 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 ATAD1Q8NBU5 361 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 ATL2Q8NHH9 583 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 ADAM32Q8TC27 787 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 GRK7Q8WTQ7 553 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 RIN2Q8WYP3 895 aaPredicted RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 SEC14L1Q92503 715 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 SLCO2A1Q92959 643 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 CCDC114Q96M63 670 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 GDAP1L1Q96MZ0 367 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 HERC2P3Q9BVR0 1158 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 MAK16Q9BXY0 300 aaKnown RBP10.95□□□□□ -0.66
SS18-217ENST00000580958 FUT8Q9BYC5 575 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 MAGEB5Q9BZ81 275 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 NEUROG2Q9H2A3 272 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 FAM204AQ9H8W3 233 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 DNPEPQ9ULA0 475 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 AP4E1Q9UPM8 1137 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 SLC27A5Q9Y2P5 690 aa10.95□□□□□ -0.66
SS18-217ENST00000580958 DENND4CQ5VZ89 1909 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 OBSL1O75147 1896 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 ADAM12O43184 909 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 ATP8B1O43520 1251 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 SOAT2O75908 522 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 SASH3O75995 380 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 FAM153BP0C7A2 387 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 RPL17P18621 184 aaKnown RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 LAG3P18627 525 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 ECHS1P30084 290 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 L1CAMP32004 1257 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 RPL21P46778 160 aaKnown RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 VCPP55072 806 aaKnown RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 YWHAGP61981 247 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-217ENST00000580958 GPR17Q13304 367 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms