RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RDXP35241 583 aaKnown RBP11.21□□□□□ -0.62
SS18-213ENST00000579640 ATP11AP98196 1134 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 HYAL1Q12794 435 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 GRIN2CQ14957 1233 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 C15orf59Q2T9L4 293 aaPredicted RBP11.21□□□□□ -0.62
SS18-213ENST00000579640 HECTD3Q5T447 861 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 LRRC38Q5VT99 294 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 GPR153Q6NV75 609 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 KLHDC10Q6PID8 442 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 SYT10Q6XYQ8 523 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 TMC8Q8IU68 726 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 DQX1Q8TE96 717 aaKnown RBP11.21□□□□□ -0.62
SS18-213ENST00000579640 FAM172AQ8WUF8 416 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 SERPINB11Q96P15 392 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 WDR24Q96S15 920 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 TBCBQ99426 244 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 NAPGQ99747 312 aaPredicted RBP11.21□□□□□ -0.62
SS18-213ENST00000579640 GOLPH3Q9H4A6 298 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 IL21Q9HBE4 155 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 ZNF334Q9HCZ1 680 aaPredicted RBP11.21□□□□□ -0.62
SS18-213ENST00000579640 OSER1Q9NX31 292 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 USTQ9Y2C2 406 aa11.21□□□□□ -0.62
SS18-213ENST00000579640 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.21□□□□□ -0.62
SS18-213ENST00000579640 MYO9BQ13459 2157 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 CCDC195A0A1B0GUA6 201 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 SOBPA7XYQ1 873 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 M0QYT0 321 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 TLR5O60602 858 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 TRUB2O95900 331 aaKnown RBP11.2□□□□□ -0.62
SS18-213ENST00000579640 IGLV3-25P01717 112 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 GABRR2P28476 465 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 DEUP1Q05D60 604 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 NNTQ13423 1086 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 RPS6KA1Q15418 735 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 CDO1Q16878 200 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 SND1Q7KZF4 910 aaKnown RBP eCLIP11.2□□□□□ -0.62
SS18-213ENST00000579640 POLNQ7Z5Q5 900 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 RHOT1Q8IXI2 618 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 UBL4BQ8N7F7 174 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 MRPS31Q92665 395 aaKnown RBP11.2□□□□□ -0.62
SS18-213ENST00000579640 CD101Q93033 1021 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 HES6Q96HZ4 224 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 CORO1BQ9BR76 489 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 IGFLR1Q9H665 355 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 FAM204AQ9H8W3 233 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 ZMYM5Q9UJ78 669 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 MTCH2Q9Y6C9 303 aa11.2□□□□□ -0.62
SS18-213ENST00000579640 RANBP2P49792 3224 aaKnown RBP11.2□□□□□ -0.62
SS18-213ENST00000579640 SOX1O00570 391 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 ZNF197O14709 1029 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PRPSAP2O60256 369 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 TADA3O75528 432 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 KRT7P08729 469 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 HOXB8P17481 243 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 DDX6P26196 483 aaKnown RBP eCLIP11.19□□□□□ -0.62
SS18-213ENST00000579640 MIPP30301 263 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 CTNNA1P35221 906 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 ATP5C1P36542 298 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 SSR1P43307 286 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 PGFP49763 221 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 KPNA1P52294 538 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 AIF1P55008 147 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 HDAC4P56524 1084 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 OTUD1Q5VV17 481 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 PDZD4Q76G19 769 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 TMEM150AQ86TG1 271 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 TAC4Q86UU9 113 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 HS6ST3Q8IZP7 471 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 VN1R2Q8NFZ6 395 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 KIF18AQ8NI77 898 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 ZNF707Q96C28 371 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 GAS2L1Q99501 681 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 TLR10Q9BXR5 811 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PIDD1Q9HB75 910 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 DDIT4Q9NX09 232 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 DNMT3BQ9UBC3 853 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 USP18Q9UMW8 372 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 HYOU1Q9Y4L1 999 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PCDHA3Q9Y5H8 950 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 CLUHO75153 1309 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 IRAK2O43187 625 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 GLP2RO95838 553 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 OAS1P00973 400 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 RHOP08100 348 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 MYL4P12829 197 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PRLRP16471 622 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 GTF2F1P35269 517 aaKnown RBP eCLIP11.19□□□□□ -0.62
SS18-213ENST00000579640 SLC25A11Q02978 314 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 MTA1Q13330 715 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 ADAM15Q13444 863 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 EIF4EBP2Q13542 120 aaPredicted RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 BOLA3Q53S33 107 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 C10orf120Q5SQS8 335 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 SH3PXD2AQ5TCZ1 1133 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PAPD7Q5XG87 772 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 ANKRD54Q6NXT1 300 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 GAREM2Q75VX8 874 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 PSTKQ8IV42 348 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 ARFGAP1Q8N6T3 406 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 SMG7Q92540 1137 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms