RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NFKBIBQ15653 356 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 GAB4Q2WGN9 574 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 RHBDF2Q6PJF5 856 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 RSRC2Q7L4I2 434 aaKnown RBP20.24■□□□□ 0.83
SS18-208ENST00000577751 LUZP1Q86V48 1076 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 MIB1Q86YT6 1006 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 BBS7Q8IWZ6 715 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 DDX1Q92499 740 aaKnown RBP20.24■□□□□ 0.83
SS18-208ENST00000577751 MIS12Q9H081 205 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 LMAN1LQ9HAT1 526 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 NLRC4Q9NPP4 1024 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 OLA1Q9NTK5 396 aaKnown RBP20.24■□□□□ 0.83
SS18-208ENST00000577751 RASAL2Q9UJF2 1139 aa20.24■□□□□ 0.83
SS18-208ENST00000577751 MYOFQ9NZM1 2061 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 E5RJQ4 531 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 TEX33O43247 280 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 CYP17A1P05093 508 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 CDH5P33151 784 aaPredicted RBP20.23■□□□□ 0.83
SS18-208ENST00000577751 PDCLQ13371 301 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 TMEM196Q5HYL7 178 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 Q6ZNB5 142 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 NEK11Q8NG66 645 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 EDEM1Q92611 657 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 FBRSL1Q9HCM7 1045 aaKnown RBP20.23■□□□□ 0.83
SS18-208ENST00000577751 MARCH2Q9P0N8 246 aa20.23■□□□□ 0.83
SS18-208ENST00000577751 LSM7Q9UK45 103 aaKnown RBP20.23■□□□□ 0.83
SS18-208ENST00000577751 A0A1B0GTH6 734 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 PAPSS1O43252 624 aaPredicted RBP20.22■□□□□ 0.83
SS18-208ENST00000577751 SART1O43290 800 aaKnown RBP20.22■□□□□ 0.83
SS18-208ENST00000577751 LTFP02788 710 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 FYNP06241 537 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 SOX5P35711 763 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 GALK1P51570 392 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 CCINQ13939 588 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 DGKKQ5KSL6 1271 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 MSANTD2Q6P1R3 559 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 BEND5Q7L4P6 421 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 PASD1Q8IV76 773 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 EPS8L1Q8TE68 723 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 RNF139Q8WU17 664 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 PCMTD1Q96MG8 357 aaPredicted RBP20.22■□□□□ 0.83
SS18-208ENST00000577751 CPXM1Q96SM3 734 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 CHRDQ9H2X0 955 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 TJP2Q9UDY2 1190 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 STRIP2Q9ULQ0 834 aa20.22■□□□□ 0.83
SS18-208ENST00000577751 KLKB1P03952 638 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 STAT1P42224 750 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 FILIP1LQ4L180 1135 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 NAIF1Q69YI7 327 aaPredicted RBP20.21■□□□□ 0.83
SS18-208ENST00000577751 FSTL4Q6MZW2 842 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 MAMSTRQ6ZN01 415 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 NOP9Q86U38 636 aaKnown RBP20.21■□□□□ 0.83
SS18-208ENST00000577751 C1orf210Q8IVY1 113 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 C1orf131Q8NDD1 294 aaKnown RBP20.21■□□□□ 0.83
SS18-208ENST00000577751 PPP1R13BQ96KQ4 1090 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 NAP1L5Q96NT1 182 aaPredicted RBP20.21■□□□□ 0.83
SS18-208ENST00000577751 P2RY13Q9BPV8 354 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 IER2Q9BTL4 223 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 SFMBT1Q9UHJ3 866 aa20.21■□□□□ 0.83
SS18-208ENST00000577751 HBS1LQ9Y450 684 aaKnown RBP20.21■□□□□ 0.83
SS18-208ENST00000577751 SLC12A8A0AV02 714 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 GFPT2O94808 682 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 ADH1CP00326 375 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 OPRD1P41143 372 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 PTPN5P54829 565 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 GRSF1Q12849 480 aaKnown RBP eCLIP20.2■□□□□ 0.82
SS18-208ENST00000577751 LRRC32Q14392 662 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 NR1I3Q14994 352 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 TRIP4Q15650 581 aaPredicted RBP20.2■□□□□ 0.82
SS18-208ENST00000577751 LY6G5CQ5SRR4 150 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 ZNF677Q86XU0 584 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 FMNL3Q8IVF7 1028 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 SYNPOQ8N3V7 929 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 GOLGA1Q92805 767 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 CD101Q93033 1021 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 NOX5Q96PH1 765 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 SPAG5Q96R06 1193 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 DCLK3Q9C098 648 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 SPHK2Q9NRA0 654 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 RBM12Q9NTZ6 932 aaKnown RBP20.2■□□□□ 0.82
SS18-208ENST00000577751 NOCTQ9UK39 431 aaKnown RBP20.2■□□□□ 0.82
SS18-208ENST00000577751 ZNF510Q9Y2H8 683 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 CEP83Q9Y592 693 aa20.2■□□□□ 0.82
SS18-208ENST00000577751 A0A1W2PQC6 194 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 HOXC11O43248 304 aaPredicted RBP20.19■□□□□ 0.82
SS18-208ENST00000577751 HMBSP08397 361 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 ADH5P11766 374 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 DRD1P21728 446 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 EIF2DP41214 584 aaKnown RBP20.19■□□□□ 0.82
SS18-208ENST00000577751 TPM4P67936 248 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 GAD2Q05329 585 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 GAS6Q14393 721 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 TMEM25Q86YD3 366 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 MAML2Q8IZL2 1156 aaPredicted RBP20.19■□□□□ 0.82
SS18-208ENST00000577751 TMEM35BQ8NCS4 154 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 EXOC4Q96A65 974 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 PLD4Q96BZ4 506 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 MUC6Q6W4X9 2439 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 CACNA1IQ9P0X4 2223 aa20.19■□□□□ 0.82
SS18-208ENST00000577751 LSM8O95777 96 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms