RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 AXLP30530 894 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 SKIV2L2P42285 1042 aaKnown RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 YWHAGP61981 247 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS53-220ENST00000576149 YWHAZP63104 245 aaKnown RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 KCNJ2P63252 427 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 PTK7Q13308 1070 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 FAM110CQ1W6H9 321 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 C4orf22Q6V702 233 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 MAGEC3Q8TD91 643 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 TCP10LQ8TDR4 215 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 PPP1R13LQ8WUF5 828 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 KLC2Q9H0B6 622 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 GDAP2Q9NXN4 497 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 GTF2IRD1Q9UHL9 959 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 USH1CQ9Y6N9 552 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 TRIP11Q15643 1979 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 KPNA7A9QM74 516 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 GOLGA8RI6L899 631 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 MAP3K6O95382 1288 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 ATP6V1G2O95670 118 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 MT-ND3P03897 115 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 CCNB1P14635 433 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 ADORA2BP29275 332 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 GNL1P36915 607 aaPredicted RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 ATXN1P54253 815 aaKnown RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 RIPK1Q13546 671 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 HIC1Q14526 733 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 SEPT7Q16181 437 aaKnown RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 XKR4Q5GH76 650 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 SH2D5Q6ZV89 423 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 ASRGL1Q7L266 308 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 OTOAQ7RTW8 1153 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 LIMS2Q7Z4I7 341 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 PNMA8AQ86V59 439 aaPredicted RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 CAND1Q86VP6 1230 aaKnown RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 CDKL3Q8IVW4 592 aaPredicted RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 KLHL29Q96CT2 875 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 PARK7Q99497 189 aaKnown RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 APOL6Q9BWW8 343 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 VPS11Q9H270 941 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 ETNK1Q9HBU6 452 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 ARHGEF3Q9NR81 526 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 MTMR10Q9NXD2 777 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 GNEQ9Y223 722 aaKnown RBP10.46□□□□□ -0.73
VPS53-220ENST00000576149 IKBKGQ9Y6K9 419 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 KAT6AQ92794 2004 aa10.46□□□□□ -0.73
VPS53-220ENST00000576149 IQCA1LA6NCM1 817 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 SLC15A5A6NIM6 579 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 IGF2BP3O00425 579 aaKnown RBP eCLIP10.46□□□□□ -0.74
VPS53-220ENST00000576149 GCATO75600 419 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 INHBAP08476 426 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 LCP1P13796 627 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 KCNE1P15382 129 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 ZFXP17010 805 aaPredicted RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 PNPLA4P41247 253 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 ACADSBP45954 432 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 NR2C2P49116 596 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 ADAM17P78536 824 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 FAAP100Q0VG06 881 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 SLC10A2Q12908 348 aaPredicted RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 SLC45A4Q5BKX6 768 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 FAXCQ5TGI0 409 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 MCUQ8NE86 351 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 CCDC110Q8TBZ0 833 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 TMEM40Q8WWA1 233 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 DNAJB3Q8WWF6 145 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 THOC1Q96FV9 657 aaKnown RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 HSFY1Q96LI6 401 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 ZNF560Q96MR9 790 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 KLF6Q99612 283 aaPredicted RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 DHX35Q9H5Z1 703 aaKnown RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 POPDC2Q9HBU9 364 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 KLK14Q9P0G3 267 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 SLC17A7Q9P2U7 560 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 AP4E1Q9UPM8 1137 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 PIN4Q9Y237 131 aaKnown RBP10.46□□□□□ -0.74
VPS53-220ENST00000576149 CHKBQ9Y259 395 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 TTLL3Q9Y4R7 772 aa10.46□□□□□ -0.74
VPS53-220ENST00000576149 HGSO14964 777 aaPredicted RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 TOMM70O94826 608 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 UNC5CO95185 931 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 APRTP07741 180 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 DHRS4L1P0CG22 281 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 ALADP13716 330 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 GBE1Q04446 702 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SLC18A2Q05940 514 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 MFSD10Q14728 455 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SNX17Q15036 470 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SETDB1Q15047 1291 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 PRAMEF19Q5SWL8 479 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 ZNF618Q5T7W0 954 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 ZNF280DQ6N043 979 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 PRPF39Q86UA1 669 aaKnown RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 SLC26A11Q86WA9 606 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SLC2A14Q8TDB8 520 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 LRRN4Q8WUT4 740 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 C10orf82Q8WW14 230 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 UPF1Q92900 1129 aaKnown RBP eCLIP10.45□□□□□ -0.747e-6■■■■□ 24.4
VPS53-220ENST00000576149 LRRC39Q96DD0 335 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 CFAP36Q96G28 342 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms