RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CYP3A43Q9HB55 503 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS53-216ENST00000574029 USP25Q9UHP3 1055 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 ADAMTS9Q9P2N4 1935 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 IGHV1OR15-9A0A0B4J2B8 117 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 PRRT4C9JH25 899 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 CALUO43852 315 aaPredicted RBP22.21■■□□□ 1.15
VPS53-216ENST00000574029 ACO1P21399 889 aaKnown RBP22.21■■□□□ 1.15
VPS53-216ENST00000574029 DUOXA1Q1HG43 343 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 SDE2Q6IQ49 451 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 Q6ZNB5 142 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 TOGARAM2Q6ZUX3 1019 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 CEP76Q8TAP6 659 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 IPO4Q8TEX9 1081 aaKnown RBP22.21■■□□□ 1.15
VPS53-216ENST00000574029 NT5C1AQ9BXI3 368 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 TMEM121BQ9BXQ6 578 aaPredicted RBP22.21■■□□□ 1.15
VPS53-216ENST00000574029 APOBEC3GQ9HC16 384 aaKnown RBP22.21■■□□□ 1.15
VPS53-216ENST00000574029 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.21■■□□□ 1.151e-6■■■■■ 229.7
VPS53-216ENST00000574029 SLC6A14Q9UN76 642 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 PCDH15Q96QU1 1955 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 PI4KAP42356 2102 aa22.21■■□□□ 1.15
VPS53-216ENST00000574029 A0A1B0GVL5 298 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 A0A1W2PQH9 124 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 UPK3BL1B0FP48 263 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 UPK3BL2E5RIL1 263 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 ZNF217O75362 1048 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 TOP3BO95985 862 aaKnown RBP22.2■■□□□ 1.14
VPS53-216ENST00000574029 CISD3P0C7P0 127 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 RARGP13631 454 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 PFKFB1P16118 471 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 SPINK2P20155 84 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 CMA1P23946 247 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 PLA2G4AP47712 749 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 SEMA3BQ13214 749 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 NFIL3Q16649 462 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 KIAA1211LQ6NV74 962 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 PIP4P1Q86T03 277 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 HSCBQ8IWL3 235 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 CHPFQ8IZ52 775 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 ZNF276Q8N554 614 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 DEFB119Q8N690 84 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 JAKMIP2Q96AA8 810 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 SLC32A1Q9H598 525 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 CAPN10Q9HC96 672 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 DNMT3LQ9UJW3 386 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 HPSEQ9Y251 543 aa22.2■■□□□ 1.14
VPS53-216ENST00000574029 ASCC3Q8N3C0 2202 aaKnown RBP22.2■■□□□ 1.14
VPS53-216ENST00000574029 MDM4O15151 490 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 ZBTB24O43167 697 aaPredicted RBP22.19■■□□□ 1.14
VPS53-216ENST00000574029 CILPO75339 1184 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 CFIP05156 583 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 HSP90AA1P07900 732 aaKnown RBP22.19■■□□□ 1.14
VPS53-216ENST00000574029 SERPINF2P08697 491 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 NDUFV2P19404 249 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 DGKGP49619 791 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 PSEN1P49768 467 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 ZNF33AQ06730 810 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 PPP3CAQ08209 521 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 KDF1Q8NAX2 398 aaPredicted RBP22.19■■□□□ 1.14
VPS53-216ENST00000574029 TAS1R2Q8TE23 839 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 ADAM33Q9BZ11 813 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 IMPG2Q9BZV3 1241 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 FBXO10Q9UK96 956 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 NUDT5Q9UKK9 219 aa22.19■■□□□ 1.14
VPS53-216ENST00000574029 GFRA2O00451 464 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 KIF20AO95235 890 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 GCLMP48507 274 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 KIF11P52732 1056 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 GFPT1Q06210 699 aaPredicted RBP22.18■■□□□ 1.14
VPS53-216ENST00000574029 ENPEPQ07075 957 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 C10orf120Q5SQS8 335 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 INTS8Q75QN2 995 aaKnown RBP22.18■■□□□ 1.14
VPS53-216ENST00000574029 CCDC186Q7Z3E2 898 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 RABEPKQ7Z6M1 372 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 SCD5Q86SK9 330 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 SLC41A1Q8IVJ1 513 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 SCNM1Q9BWG6 230 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 NIF3L1Q9GZT8 377 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 FSCN3Q9NQT6 498 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 USP3Q9Y6I4 520 aa22.18■■□□□ 1.14
VPS53-216ENST00000574029 STC2O76061 302 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 RHOBTB3O94955 611 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 TRIM49P0CI25 452 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 TRIM49CP0CI26 452 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 NR2F2P24468 414 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 TADA2BQ86TJ2 420 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 P2RY11Q96G91 374 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 MRGPRX1Q96LB2 322 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 DUSP16Q9BY84 665 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 CLIC5Q9NZA1 410 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 NAGPAQ9UK23 515 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 ZMIZ1Q9ULJ6 1067 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 CYP8B1Q9UNU6 501 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 RAD54BQ9Y620 910 aa22.17■■□□□ 1.14
VPS53-216ENST00000574029 CD58P19256 250 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 ATXN3P54252 364 aaPredicted RBP22.16■■□□□ 1.14
VPS53-216ENST00000574029 MCCD1P59942 119 aaPredicted RBP22.16■■□□□ 1.14
VPS53-216ENST00000574029 PPP1R26Q5T8A7 1209 aaPredicted RBP22.16■■□□□ 1.14
VPS53-216ENST00000574029 HDDC3Q8N4P3 179 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 GATA6Q92908 595 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms