RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HIDE1A8MVS5 230 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 EFCAB8A8MWE9 144 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 TADA3O75528 432 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 RALAP11233 206 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 KDELR1P24390 212 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PBX2P40425 430 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PGFP49763 221 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 TERF1P54274 439 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PITX1P78337 314 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 TWF1Q12792 350 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 NME3Q13232 169 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 TAF12Q16514 161 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 KCNT1Q5JUK3 1230 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 ERMARDQ5T6L9 678 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 CCDC149Q6ZUS6 474 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 CYP4V2Q6ZWL3 525 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 SND1Q7KZF4 910 aaKnown RBP eCLIP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 SLC13A5Q86YT5 568 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PSTKQ8IV42 348 aaKnown RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 CCDC50Q8IVM0 306 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 KCTD6Q8NC69 237 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PDZD8Q8NEN9 1154 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 SPATA4Q8NEY3 305 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 DQX1Q8TE96 717 aaKnown RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 RNF139Q8WU17 664 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 MAIP1Q8WWC4 291 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 RAPGEF5Q92565 580 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 HSPH1Q92598 858 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 RNF25Q96BH1 459 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 MYRFLQ96LU7 910 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PBX4Q9BYU1 374 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 NKX2-4Q9H2Z4 354 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 FAM204AQ9H8W3 233 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 KLHL11Q9NVR0 708 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 DDIT4Q9NX09 232 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 CLIC5Q9NZA1 410 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 CALCOCO1Q9P1Z2 691 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 FBXW11Q9UKB1 542 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 MAGED2Q9UNF1 606 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-209ENST00000573474 PLXNA4Q9HCM2 1894 aa14.26□□□□□ -0.13
CCDC40-209ENST00000573474 LRRD1A4D1F6 860 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 C3orf70A6NLC5 250 aaPredicted RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 PI4K2BG5E9Z4 385 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 KRIT1O00522 736 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 MDM4O15151 490 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 GLUD1P00367 558 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ZDHHC11BP0C7U3 371 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 SPATA31D3P0C874 917 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 HMGA1P17096 107 aaKnown RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 PTPN7P35236 360 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ATXN1P54253 815 aaKnown RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 AIF1P55008 147 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 CAMK1Q14012 370 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 PDK2Q15119 407 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 PPP2R5EQ16537 467 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 SMTNL2Q2TAL5 461 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 MSANTD2Q6P1R3 559 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 MFSD7Q6UXD7 560 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 SPOCD1Q6ZMY3 1216 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 SPATA31D4Q6ZUB0 917 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 RTL10Q7L3V2 364 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 RSRC2Q7L4I2 434 aaKnown RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 TAC4Q86UU9 113 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ITIH5Q86UX2 942 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 MAP7D3Q8IWC1 876 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 KREMEN2Q8NCW0 462 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 LRRN4CLQ8ND94 238 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ADAM32Q8TC27 787 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ACSF2Q96CM8 615 aaPredicted RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 TRMT2BQ96GJ1 504 aaKnown RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 OSBPL8Q9BZF1 889 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 SMOC2Q9H3U7 446 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 OLA1Q9NTK5 396 aaKnown RBP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 PIGVQ9NUD9 493 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 OSER1Q9NX31 292 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC40-209ENST00000573474 ASB3Q9Y575 518 aa14.25□□□□□ -0.13
CCDC40-209ENST00000573474 COL4A4P53420 1690 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 SYNJ2BP-COX16A0A087WUM0 186 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 GOLGA6L10A0A0M3HER8 536 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 IGLV3-25P01717 112 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 RARGP13631 454 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 IRS1P35568 1242 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 CDKN2BP42772 138 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 PPP3CCP48454 512 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 CXCR3P49682 368 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 ARSEP51690 589 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 CLCN4P51793 760 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 KRT81Q14533 505 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 TAZQ16635 292 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 TFDP3Q5H9I0 405 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 SNX30Q5VWJ9 437 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 DNAJB7Q7Z6W7 309 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 FAM131BQ86XD5 332 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 VSIG1Q86XK7 387 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 MMGT1Q8N4V1 131 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 ZNF276Q8N554 614 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 FAM71BQ8TC56 605 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 PSMG2Q969U7 264 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 NTAN1Q96AB6 310 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms