RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FBXO10Q9UK96 956 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 PILRBQ9UKJ0 227 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 NUDT5Q9UKK9 219 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 SCML2Q9UQR0 700 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 USP3Q9Y6I4 520 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 NYNRINQ9P2P1 1898 aaKnown RBP7.1□□□□□ -1.27
VPS53-213ENST00000572334 GOLGA4Q13439 2230 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 ANKRD11Q6UB99 2663 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 ATP8B3O60423 1300 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ATXN2Q99700 1313 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 FREM2Q5SZK8 3169 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ACACAQ13085 2346 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 IGHV1OR15-9A0A0B4J2B8 117 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 A0A1W2PQH9 124 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 TCRBV21S2A2A0A5A6 115 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 KHNYNO15037 678 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 CILPO75339 1184 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 RHOBTB3O94955 611 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 KLKB1P03952 638 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ATXN8OSP0DMR3 200 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 PDIA4P13667 645 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 CSRP1P21291 193 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 ITPKAP23677 461 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ADORA2BP29275 332 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 WASP42768 502 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 DHPSP49366 369 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 NOVA1P51513 510 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 VAMP7P51809 220 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 NDUFA8P51970 172 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 KIF11P52732 1056 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 PPP1R26Q5T8A7 1209 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 SH3PXD2AQ5TCZ1 1133 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 CEP135Q66GS9 1140 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 KLHDC10Q6PID8 442 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SLC23A3Q6PIS1 610 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ARMCX6Q7L4S7 300 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 CYP2U1Q7Z449 544 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 PIP4P1Q86T03 277 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 TTC30AQ86WT1 665 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SYT12Q8IV01 421 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SLC41A1Q8IVJ1 513 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 CEP57L1Q8IYX8 460 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ZNF276Q8N554 614 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 ZNF513Q8N8E2 541 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 RBBP8NLQ8NC74 664 aaPredicted RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 SPRYD3Q8NCJ5 442 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 KCNV2Q8TDN2 545 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 HMGB4Q8WW32 186 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 TAF4BQ92750 862 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SEMA4DQ92854 862 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 CYFIP2Q96F07 1278 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 DCBLD2Q96PD2 775 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 GABRG3Q99928 467 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SLC6A17Q9H1V8 727 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 GOLPH3LQ9H4A5 285 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 TMEM9BQ9NQ34 198 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 TLR8Q9NR97 1041 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 EXOC1Q9NV70 894 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 DEC1Q9P2X7 70 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 CFAP45Q9UL16 551 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SH3BP1Q9Y3L3 701 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 KNTC1P50748 2209 aa7.09□□□□□ -1.27
VPS53-213ENST00000572334 SMG1Q96Q15 3661 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 DSPP15924 2871 aaKnown RBP7.09□□□□□ -1.27
VPS53-213ENST00000572334 ARID1BQ8NFD5 2236 aaPredicted RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 TBC1D3BA6NDS4 549 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 C1QTNF9BB2RNN3 333 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 WASH3PC4AMC7 463 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 NEDD8-MDP1E9PL57 170 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 STC2O76061 302 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ALDH1A2O94788 518 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 MYL1P05976 194 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 C1QTNF9P0C862 333 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 FAM200BP0CF97 657 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 RARGP13631 454 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 TYRP14679 529 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 CD44P16070 742 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 NDUFV2P19404 249 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 SPINK2P20155 84 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ACO1P21399 889 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 NR2F2P24468 414 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 NTSR1P30989 418 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ATP5C1P36542 298 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 PIK3CAP42336 1068 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 GCLMP48507 274 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ENPEPQ07075 957 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ZNF252P-AS1Q0IIN9 211 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 SKOR2Q2VWA4 1001 aaPredicted RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 ANO4Q32M45 955 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 TRIM61Q5EBN2 209 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 RAB41Q5JT25 222 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 SPDYCQ5MJ68 293 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 C10orf76Q5T2E6 689 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 FYB2Q5VWT5 728 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 TPGS1Q6ZTW0 290 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 LPCAT2Q7L5N7 544 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 BHLHA9Q7RTU4 235 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 CCDC186Q7Z3E2 898 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 DEFB119Q8N690 84 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms