RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PDIA3P30101 505 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 MC4RP32245 332 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 KIF5BP33176 963 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 GLRBP48167 497 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 OAZ1P54368 228 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 DRG2P55039 364 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 ITGA1P56199 1179 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 SOX10P56693 466 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 BPIFB3P59826 476 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 KIAA1755Q5JYT7 1200 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 FAM205BPQ63HN1 556 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 DAAM2Q86T65 1068 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 CILP2Q8IUL8 1156 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 NRSN1Q8IZ57 195 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 ZMIZ2Q8NF64 920 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 NCOA7Q8NI08 942 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 ASB12Q8WXK4 309 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 MAP4K1Q92918 833 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 HIC2Q96JB3 615 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 TIGD1Q96MW7 591 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 TMEM47Q9BQJ4 181 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 GORASP1Q9BQQ3 440 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 SDF4Q9BRK5 362 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 ADPGKQ9BRR6 497 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 C11orf84Q9BUA3 381 aaPredicted RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 MOV10L1Q9BXT6 1211 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 TEX13BQ9BXU2 312 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 MAGEH1Q9H213 219 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 PORCNQ9H237 461 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 IL17RBQ9NRM6 502 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 GALNT8Q9NY28 637 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 USP36Q9P275 1121 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 GRHPRQ9UBQ7 328 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 FBXO40Q9UH90 709 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 MSRAQ9UJ68 235 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 RLFQ13129 1914 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 RPTORQ8N122 1335 aa6.65□□□□□ -1.35
VPS53-212ENST00000572259 ZSWIM8A7E2V4 1837 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 PARP14Q460N5 1801 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CPLX1O14810 134 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ATP2A1O14983 1001 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 HOXC11O43248 304 aaPredicted RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 AHCYL1O43865 530 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 NMT2O60551 498 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CNMDO75829 334 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CYP7B1O75881 506 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 APOL3O95236 402 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 POLBP06746 335 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 THP07101 528 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 GJB1P08034 283 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CCL5P13501 91 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 AGXTP21549 392 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 C5AR1P21730 350 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 MUTP22033 750 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 GLDCP23378 1020 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 HTR1BP28222 390 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 IL12RB1P42701 662 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 NPTX2P47972 431 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 NOVP48745 357 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CAP1Q01518 475 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 SLC6A3Q01959 620 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ALDH6A1Q02252 535 aaKnown RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 ROM1Q03395 351 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 PTH1RQ03431 593 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 MESP2Q0VG99 397 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 FOXO1Q12778 655 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 TRAF1Q13077 416 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 GRB14Q14449 540 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 POSTNQ15063 836 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 PGS1Q32NB8 556 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 PRAMEF9Q5VWM5 478 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ISM2Q6H9L7 571 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ATG14Q6ZNE5 492 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 KRT74Q7RTS7 529 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 TBC1D10CQ8IV04 446 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CMIPQ8IY22 773 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 DTX3Q8N9I9 347 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 KYQ8NBH2 561 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 MSANTD4Q8NCY6 345 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CHST13Q8NET6 341 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 UCMAQ8WVF2 138 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ZFPM2Q8WW38 1151 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 IPCEF1Q8WWN9 437 aaPredicted RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 ANKS1AQ92625 1134 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ZBTB8AQ96BR9 441 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 FOXRED1Q96CU9 486 aaPredicted RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 RADILQ96JH8 1075 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ZSWIM3Q96MP5 696 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 SYT3Q9BQG1 590 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 ZWILCHQ9H900 591 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 SLC38A10Q9HBR0 1119 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 FBXO28Q9NVF7 368 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 CROTQ9UKG9 612 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 CNOT6Q9ULM6 557 aaKnown RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 CORO2BQ9UQ03 480 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 RBM8AQ9Y5S9 174 aaKnown RBP6.64□□□□□ -1.35
VPS53-212ENST00000572259 PMF1-BGLAPU3KQ54 211 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 PLXNB2O15031 1838 aa6.64□□□□□ -1.35
VPS53-212ENST00000572259 IFIT3O14879 490 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms