RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 METTL18O95568 372 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 GNAZP19086 355 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 L1CAMP32004 1257 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 SLC10A2Q12908 348 aaPredicted RBP23.63■■□□□ 1.37
VPS53-211ENST00000571805 ZNF534Q76KX8 674 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 LRRC39Q96DD0 335 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 MIPEPQ99797 713 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 C11orf84Q9BUA3 381 aaPredicted RBP23.63■■□□□ 1.37
VPS53-211ENST00000571805 TMEM120AQ9BXJ8 343 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 ARL8BQ9NVJ2 186 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 SLC5A4Q9NY91 659 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 RFPL1O75677 317 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 KRT37O76014 449 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 CYP2F1P24903 491 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 CDK16Q00536 496 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 WASHC2DQ5SRD0 308 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 UNC5AQ6ZN44 842 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 FASTKD5Q7L8L6 764 aaKnown RBP23.63■■□□□ 1.37
VPS53-211ENST00000571805 STK32AQ8WU08 396 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 OPTNQ96CV9 577 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 SIGLEC10Q96LC7 697 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 LPIN3Q9BQK8 851 aa23.63■■□□□ 1.37
VPS53-211ENST00000571805 UGT1A9O60656 530 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 GCATO75600 419 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 APOEP02649 317 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 CALB2P22676 271 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 ZNF792Q3KQV3 632 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 C4orf22Q6V702 233 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 MAB21L3Q8N8X9 362 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 EMID1Q96A84 441 aaPredicted RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 MAGEB5Q9BZ81 275 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 UGT1A7Q9HAW7 530 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 UGT1A10Q9HAW8 530 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 UGT1A8Q9HAW9 530 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 PLLPQ9Y342 182 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 RBM47A0AV96 593 aaKnown RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 HAUS5O94927 633 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 GSTA2P09210 222 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 SERPINB3P29508 390 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 PTPN9P43378 593 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 MRPS5P82675 430 aaKnown RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 GBE1Q04446 702 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 DPYSL2Q16555 572 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 ZDHHC17Q8IUH5 632 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 CDKL3Q8IVW4 592 aaPredicted RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 CENPIQ92674 756 aaPredicted RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 DENND2DQ9H6A0 471 aaPredicted RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 HESX1Q9UBX0 185 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 RPL26L1Q9UNX3 145 aaKnown RBP23.62■■□□□ 1.37
VPS53-211ENST00000571805 DERAQ9Y315 318 aa23.62■■□□□ 1.37
VPS53-211ENST00000571805 H3BRB1 525 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 NEFHP12036 1026 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 CCNFP41002 786 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 CLNS1AP54105 237 aaKnown RBP23.61■■□□□ 1.37
VPS53-211ENST00000571805 ZBTB6Q15916 424 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 ANKRD20A2Q5SQ80 823 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 ANKRD20A1Q5TYW2 823 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 ANKRD20A3Q5VUR7 823 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 PRR11Q96HE9 360 aaPredicted RBP23.61■■□□□ 1.37
VPS53-211ENST00000571805 TUBB6Q9BUF5 446 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 CADM1Q9BY67 442 aaKnown RBP23.61■■□□□ 1.37
VPS53-211ENST00000571805 TUT1Q9H6E5 874 aaKnown RBP23.61■■□□□ 1.37
VPS53-211ENST00000571805 PLEKHA5Q9HAU0 1116 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 FBXO6Q9NRD1 293 aaPredicted RBP23.61■■□□□ 1.37
VPS53-211ENST00000571805 MTMR10Q9NXD2 777 aa23.61■■□□□ 1.37
VPS53-211ENST00000571805 NPTXRO95502 500 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 CSH1P0DML2 217 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 CSH2P0DML3 217 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 HOXA11P31270 313 aaPredicted RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 ATXN1P54253 815 aaKnown RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 ENDOVQ8N8Q3 282 aaKnown RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 CLEC4CQ8WTT0 213 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 TRIM56Q9BRZ2 755 aaKnown RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 VTA1Q9NP79 307 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 SNTG2Q9NY99 539 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 SBF1O95248 1867 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 TPBGLP0DKB5 382 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 ADCYAP1R1P41586 468 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 SLC8A3P57103 927 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 DCAF4L1Q3SXM0 396 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 LGSNQ5TDP6 509 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 ARHGAP17Q68EM7 881 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 VPS52Q8N1B4 723 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 MPP5Q8N3R9 675 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 CDCA5Q96FF9 252 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 NSL1Q96IY1 281 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 EBNA1BP2Q99848 306 aaKnown RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 IQCGQ9H095 443 aaKnown RBP23.6■■□□□ 1.37
VPS53-211ENST00000571805 DPEP3Q9H4B8 488 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 MKS1Q9NXB0 559 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 TUBGCP4Q9UGJ1 667 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 GTF2IRD1Q9UHL9 959 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 RALGAPA2Q2PPJ7 1873 aa23.6■■□□□ 1.37
VPS53-211ENST00000571805 HMX2A2RU54 273 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 CCDC22O60826 627 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 TPSB2P20231 275 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 R3HDM1Q15032 1099 aaKnown RBP23.59■■□□□ 1.37
VPS53-211ENST00000571805 TPSAB1Q15661 275 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 GRIK4Q16099 956 aa23.59■■□□□ 1.37
VPS53-211ENST00000571805 TRMT10BQ6PF06 316 aaKnown RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms