RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CTAGE4Q8IX94 777 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 TTLL2Q9BWV7 592 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 FAM204AQ9H8W3 233 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 ZRANB2O95218 330 aaKnown RBP eCLIP31.88■■■□□ 2.69
CTCF-203ENST00000566078 FGGP02679 453 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 IRS1P35568 1242 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 DEUP1Q05D60 604 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 NME3Q13232 169 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 CAMK1Q14012 370 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 HSPH1Q92598 858 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 RBM41Q96IZ5 413 aaKnown RBP31.88■■■□□ 2.69
CTCF-203ENST00000566078 CERS4Q9HA82 394 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 FBXW11Q9UKB1 542 aa31.88■■■□□ 2.69
CTCF-203ENST00000566078 TTC7AQ9ULT0 858 aaPredicted RBP31.88■■■□□ 2.69
CTCF-203ENST00000566078 PI4K2BG5E9Z4 385 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 H3BNC9 293 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 ENDOD1O94919 500 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 RARAP10276 462 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 VEPH1Q14D04 833 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 ZNF572Q7Z3I7 529 aaPredicted RBP31.87■■■□□ 2.69
CTCF-203ENST00000566078 DQX1Q8TE96 717 aaKnown RBP31.87■■■□□ 2.69
CTCF-203ENST00000566078 RNF25Q96BH1 459 aaPredicted RBP31.87■■■□□ 2.69
CTCF-203ENST00000566078 OSER1Q9NX31 292 aa31.87■■■□□ 2.69
CTCF-203ENST00000566078 MYO7AQ13402 2215 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 LRRD1A4D1F6 860 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 CSH1P0DML2 217 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 CSH2P0DML3 217 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 PPP2R2DQ66LE6 453 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 LILRA6Q6PI73 481 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 TAC4Q86UU9 113 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 RCOR2Q8IZ40 523 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 SLITRK1Q96PX8 696 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 TLR8Q9NR97 1041 aaKnown RBP31.86■■■□□ 2.69
CTCF-203ENST00000566078 PIGVQ9NUD9 493 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 DDIT4Q9NX09 232 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 GLUD1P00367 558 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 LONRF2Q1L5Z9 754 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 FAM131BQ86XD5 332 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 RAPGEF5Q92565 580 aa31.86■■■□□ 2.69
CTCF-203ENST00000566078 PGAP3Q96FM1 320 aaPredicted RBP31.86■■■□□ 2.69
CTCF-203ENST00000566078 SNRNP25Q9BV90 132 aaKnown RBP31.86■■■□□ 2.69
CTCF-203ENST00000566078 STAU2Q9NUL3 570 aaKnown RBP eCLIP31.86■■■□□ 2.69
CTCF-203ENST00000566078 PSEN1P49768 467 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 EPHB3P54753 998 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 C2orf54Q08AI8 447 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 PLD1Q13393 1074 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 TAF12Q16514 161 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 BOLA3Q53S33 107 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 CCDC185Q8N715 623 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 MYRIPQ8NFW9 859 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 RNF139Q8WU17 664 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 TEKT4Q8WW24 435 aa31.85■■■□□ 2.69
CTCF-203ENST00000566078 NAP1L3Q99457 506 aaPredicted RBP31.85■■■□□ 2.69
CTCF-203ENST00000566078 HMGA1P17096 107 aaKnown RBP31.84■■■□□ 2.69
CTCF-203ENST00000566078 BMP8BP34820 402 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 LLGL1Q15334 1064 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 CLUL1Q15846 466 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 RSRC2Q7L4I2 434 aaKnown RBP31.84■■■□□ 2.69
CTCF-203ENST00000566078 SLC13A5Q86YT5 568 aaPredicted RBP31.84■■■□□ 2.69
CTCF-203ENST00000566078 KREMEN2Q8NCW0 462 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 RPGRIP1Q96KN7 1286 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 SMOC2Q9H3U7 446 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 GPATCH2LQ9NWQ4 482 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 TRANK1O15050 2925 aa31.84■■■□□ 2.69
CTCF-203ENST00000566078 TADA3O75528 432 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 CETN2P41208 172 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 MFSD7Q6UXD7 560 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 SPOCD1Q6ZMY3 1216 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 CCDC149Q6ZUS6 474 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 ADAT2Q7Z6V5 191 aaKnown RBP31.83■■■□□ 2.69
CTCF-203ENST00000566078 KCTD6Q8NC69 237 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 SPATA4Q8NEY3 305 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 CLIC5Q9NZA1 410 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 NUDT5Q9UKK9 219 aa31.83■■■□□ 2.69
CTCF-203ENST00000566078 MDM4O15151 490 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 RARGP13631 454 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 KDELR1P24390 212 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 CLCN4P51793 760 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 ANKS1BQ7Z6G8 1248 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 TDHQ8IZJ6 230 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 CMASQ8NFW8 434 aaPredicted RBP31.82■■■□□ 2.69
CTCF-203ENST00000566078 ARNTL2Q8WYA1 636 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 CASP10Q92851 521 aa31.82■■■□□ 2.69
CTCF-203ENST00000566078 WDR6Q9NNW5 1121 aaKnown RBP31.82■■■□□ 2.69
CTCF-203ENST00000566078 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.82■■■□□ 2.69
CTCF-203ENST00000566078 F9P00740 461 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 IGLV3-25P01717 112 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 C8AP07357 584 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 ZDHHC11BP0C7U3 371 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 RALAP11233 206 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 GBP1P32455 592 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 ERMARDQ5T6L9 678 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 PDE12Q6L8Q7 609 aaKnown RBP31.82■■■□□ 2.68
CTCF-203ENST00000566078 SND1Q7KZF4 910 aaKnown RBP eCLIP31.82■■■□□ 2.68
CTCF-203ENST00000566078 PDZD8Q8NEN9 1154 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 OVCA2Q8WZ82 227 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 TRMT2BQ96GJ1 504 aaKnown RBP31.82■■■□□ 2.68
CTCF-203ENST00000566078 AP1M1Q9BXS5 423 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 OSBPL8Q9BZF1 889 aa31.82■■■□□ 2.68
CTCF-203ENST00000566078 MTPAPQ9NVV4 582 aaKnown RBP eCLIP31.82■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms