RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 C10orf120Q5SQS8 335 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 BTBD8Q5XKL5 378 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 ANO7Q6IWH7 933 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 Q6ZNB5 142 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 TPGS1Q6ZTW0 290 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 MIB1Q86YT6 1006 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 MDGA1Q8NFP4 955 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 LMO3Q8TAP4 145 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 NELFBQ8WX92 580 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 NDRG1Q92597 394 aaKnown RBP11.38□□□□□ -0.59
VPS39-208ENST00000564994 KAT5Q92993 513 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 LOXL4Q96JB6 756 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 CNOT6LQ96LI5 555 aaKnown RBP11.38□□□□□ -0.59
VPS39-208ENST00000564994 METTL14Q9HCE5 456 aaKnown RBP11.38□□□□□ -0.59
VPS39-208ENST00000564994 RXFP3Q9NSD7 469 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 CLIC5Q9NZA1 410 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 MARK1Q9P0L2 795 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 DEC1Q9P2X7 70 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 TSPAN16Q9UKR8 245 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 CDV3Q9UKY7 258 aaKnown RBP11.38□□□□□ -0.59
VPS39-208ENST00000564994 INVSQ9Y283 1065 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.37□□□□□ -0.59
VPS39-208ENST00000564994 TBC1D3BA6NDS4 549 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 RNF225M0QZC1 329 aaPredicted RBP11.37□□□□□ -0.59
VPS39-208ENST00000564994 O00370 1275 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PMM2O15305 246 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 CACNG3O60359 315 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 TYRP14679 529 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 SDHBP21912 280 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 BCKDHBP21953 392 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PPP1R2P41236 205 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PI4KAP42356 2102 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 TKTL1P51854 596 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 STX17P56962 302 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 GOLGA8FQ08AF8 430 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 GOLGA8DPQ0D2H9 430 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 EFEMP1Q12805 493 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 SF3A2Q15428 464 aaKnown RBP11.37□□□□□ -0.59
VPS39-208ENST00000564994 CCDC40Q4G0X9 1142 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PKDCCQ504Y2 493 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 SGO2Q562F6 1265 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PLA2G2CQ5R387 149 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 PM20D1Q6GTS8 502 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 FOXR2Q6PJQ5 311 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 TOGARAM2Q6ZUX3 1019 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 TERB1Q8NA31 727 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 OLIG1Q8TAK6 271 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 UBA3Q8TBC4 463 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 TFAP2BQ92481 460 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 ZSWIM1Q9BR11 485 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 BBS2Q9BXC9 721 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 ULBP1Q9BZM6 244 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 SMOC1Q9H4F8 434 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 DNAJC17Q9NVM6 304 aaKnown RBP11.37□□□□□ -0.59
VPS39-208ENST00000564994 RASAL2Q9UJF2 1139 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 LSM7Q9UK45 103 aaKnown RBP11.37□□□□□ -0.59
VPS39-208ENST00000564994 CTNND2Q9UQB3 1225 aa11.37□□□□□ -0.59
VPS39-208ENST00000564994 DCDC2BA2VCK2 349 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 XPO1O14980 1071 aaKnown RBP11.36□□□□□ -0.59
VPS39-208ENST00000564994 GABBR2O75899 941 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 ZBED1O96006 694 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 CALCAP01258 141 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 HMBSP08397 361 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 CISD3P0C7P0 127 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 ZNF806P0C7X5 589 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 RALAP11233 206 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 VDRP11473 427 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 CD19P15391 556 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 TBXAS1P24557 533 aaPredicted RBP11.36□□□□□ -0.59
VPS39-208ENST00000564994 BCAT1P54687 386 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 YWHAGP61981 247 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS39-208ENST00000564994 HSF5Q4G112 596 aaPredicted RBP11.36□□□□□ -0.59
VPS39-208ENST00000564994 EOGTQ5NDL2 527 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 C10orf76Q5T2E6 689 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 GRAMD4Q6IC98 578 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 TADA2BQ86TJ2 420 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 ARHGEF19Q8IW93 802 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 TRIM59Q8IWR1 403 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 FRMD1Q8N878 549 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 ZNF513Q8N8E2 541 aaPredicted RBP11.36□□□□□ -0.59
VPS39-208ENST00000564994 NETO1Q8TDF5 533 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 BHMTQ93088 406 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 NT5C1BQ96P26 610 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 RTKNQ9BST9 563 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 PLK2Q9NYY3 685 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 CIZ1Q9ULV3 898 aaPredicted RBP11.36□□□□□ -0.59
VPS39-208ENST00000564994 STARD13Q9Y3M8 1113 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 PCDHGA5Q9Y5G8 931 aa11.36□□□□□ -0.59
VPS39-208ENST00000564994 PRRT4C9JH25 899 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 SLC30A4O14863 429 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 RHOBTB1O94844 696 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 CORO1AP31146 461 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 GBP1P32455 592 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 MPLP40238 635 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 WASP42768 502 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 MARSP56192 900 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 SLC8A3P57103 927 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 YWHAEP62258 255 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 COG7P83436 770 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 ADIGQ0VDE8 80 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms