RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NRBP2Q9NSY0 501 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 PIH1D1Q9NWS0 290 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 SIRPGQ9P1W8 387 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 SIX4Q9UIU6 781 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ANGPTL2Q9UKU9 493 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 HBS1LQ9Y450 684 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 ARHGAP42A6NI28 874 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 SLC15A5A6NIM6 579 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PRPSAP2O60256 369 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 SPAG6O75602 509 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 SORBS2O94875 1100 aaKnown RBP13.69□□□□□ -0.22
CLN3-210ENST00000563874 ITGB3P05106 788 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 C6orf222P0C671 652 aaPredicted RBP13.69□□□□□ -0.22
CLN3-210ENST00000563874 RGS7P49802 495 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 BCAR1P56945 870 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PPP6R3Q5H9R7 873 aaPredicted RBP13.69□□□□□ -0.22
CLN3-210ENST00000563874 RTKN2Q8IZC4 609 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 ZNF280CQ8ND82 737 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 ITFG2Q969R8 447 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 RNF157Q96PX1 679 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 ZCWPW1Q9H0M4 648 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 NDE1Q9NXR1 346 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PAK5Q9P286 719 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 MAGEA13PA6NCF6 341 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 APOEP02649 317 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 TCF7P36402 384 aaPredicted RBP13.69□□□□□ -0.22
CLN3-210ENST00000563874 CA9Q16790 459 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 C6orf163Q5TEZ5 329 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 C1orf127Q8N9H9 656 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PYDC1Q8WXC3 89 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 USP6NLQ92738 828 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 FGD4Q96M96 766 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 WRNIP1Q96S55 665 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PPP1R16BQ96T49 567 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 CCDC106Q9BWC9 280 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 ETNK2Q9NVF9 386 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 WDR35Q9P2L0 1181 aa13.69□□□□□ -0.22
CLN3-210ENST00000563874 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 ITM2AO43736 263 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 MAFO75444 373 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 IL1BP01584 269 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 IL4RP24394 825 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 GPD2P43304 727 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 ZNF143P52747 638 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 ACTR3P61158 418 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 LGSNQ5TDP6 509 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 WDR78Q5VTH9 848 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 CWF19L1Q69YN2 538 aaKnown RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 HIPK4Q8NE63 616 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 MCRS1Q96EZ8 462 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 TUBGCP5Q96RT8 1024 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 MAGEB5Q9BZ81 275 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 PDGFDQ9GZP0 370 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 FER1L6Q2WGJ9 1857 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 E2F8A0AVK6 867 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 KRT38O76015 456 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 FARP2O94887 1054 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 METTL18O95568 372 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 GPD1P21695 349 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 EFNA5P52803 228 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 RPL10AP62906 217 aaKnown RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 CRADDP78560 199 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 STX3Q13277 289 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 TFDP2Q14188 446 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 FAM183BPQ6ZVS7 135 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 RAPH1Q70E73 1250 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 NET1Q7Z628 596 aaPredicted RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 GALNT15Q8N3T1 639 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 PQLC3Q8N755 202 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 CCDC124Q96CT7 223 aaKnown RBP13.68□□□□□ -0.22
CLN3-210ENST00000563874 KLC2Q9H0B6 622 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 PNPLA8Q9NP80 782 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 PPME1Q9Y570 386 aa13.68□□□□□ -0.22
CLN3-210ENST00000563874 LGR5O75473 907 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 SNUPNO95149 360 aaKnown RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 BPGMP07738 259 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 LYNP07948 512 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 PRKCHP24723 683 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 GMPRP36959 345 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 EPHB1P54762 984 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 AP2B1P63010 937 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 DSG1Q02413 1049 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 GRM1Q13255 1194 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 LY6KQ17RY6 165 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 TRMT5Q32P41 509 aaKnown RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 RALGPS1Q5JS13 557 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ATF7IP2Q5U623 682 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 MAP1SQ66K74 1059 aaPredicted RBP13.67□□□□□ -0.22
CLN3-210ENST00000563874 ZBTB8OSQ8IWT0 167 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 ADGRF2Q8IZF7 708 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 EFCAB3Q8N7B9 438 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 C12orf29Q8N999 325 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 STKLD1Q8NE28 680 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 PCDH19Q8TAB3 1148 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 TMEM176AQ96HP8 235 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 GBP5Q96PP8 586 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 CNPY3Q9BT09 278 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 F8W8V4 182 aa13.67□□□□□ -0.22
CLN3-210ENST00000563874 PTPRAP18433 802 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms