RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLN3-208ENST00000561505 HMGXB4Q9UGU5 601 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 SLC27A6Q9Y2P4 619 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 NFE2L3Q9Y4A8 694 aa17.35■□□□□ 0.37
CLN3-208ENST00000561505 K7ELQ4 463 aaPredicted RBP17.34■□□□□ 0.37
CLN3-208ENST00000561505 MAPK13O15264 365 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 P4HA1P13674 534 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 MAPK8P45983 427 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 ZNF132P52740 706 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 ENPEPQ07075 957 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 GPRIN1Q7Z2K8 1008 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 C12orf29Q8N999 325 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 CEP192Q8TEP8 1941 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 MRGPRX1Q96LB2 322 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 NMUR1Q9HB89 426 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 DNAJC17Q9NVM6 304 aaKnown RBP17.34■□□□□ 0.37
CLN3-208ENST00000561505 RALYQ9UKM9 306 aaKnown RBP17.34■□□□□ 0.37
CLN3-208ENST00000561505 PCDHA7Q9UN72 937 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 PCDHA5Q9Y5H7 936 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 USP3Q9Y6I4 520 aa17.34■□□□□ 0.37
CLN3-208ENST00000561505 ATRXP46100 2492 aa17.33■□□□□ 0.37
CLN3-208ENST00000561505 DSPP15924 2871 aaKnown RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 ATXN2Q99700 1313 aaKnown RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 HYAL3O43820 417 aaPredicted RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 PENKP01210 267 aaPredicted RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 SLFN14P0C7P3 912 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 ACO1P21399 889 aaKnown RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 PLA2G4AP47712 749 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 MAP3K7CLP57077 242 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 FAM193AP78312 1265 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 ATL3Q6DD88 541 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 TOGARAM2Q6ZUX3 1019 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 RAB44Q7Z6P3 723 aaPredicted RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 MINDY1Q8N5J2 469 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 DNASE2BQ8WZ79 361 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 ELMO3Q96BJ8 720 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 BBS2Q9BXC9 721 aa17.33■□□□□ 0.36
CLN3-208ENST00000561505 FAM124BQ9H5Z6 455 aaPredicted RBP17.33■□□□□ 0.36
CLN3-208ENST00000561505 CACNA1GO43497 2377 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 SPAARA0A1B0GVQ0 90 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 NPC1O15118 1278 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 ACTN4O43707 911 aaKnown RBP17.32■□□□□ 0.36
CLN3-208ENST00000561505 OPHN1O60890 802 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 CFIP05156 583 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 FAM200BP0CF97 657 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 IRF1P10914 325 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 PSEN1P49768 467 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 KIF11P52732 1056 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 SIM1P81133 766 aaPredicted RBP17.32■□□□□ 0.36
CLN3-208ENST00000561505 NFIL3Q16649 462 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 SDE2Q6IQ49 451 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 SCARA5Q6ZMJ2 495 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 CCDC186Q7Z3E2 898 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 SCD5Q86SK9 330 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 CHPFQ8IZ52 775 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 RBBP8NLQ8NC74 664 aaPredicted RBP17.32■□□□□ 0.36
CLN3-208ENST00000561505 TWNKQ96RR1 684 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 CYP3A43Q9HB55 503 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 FSCN3Q9NQT6 498 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.32■□□□□ 0.366e-9■■■■■ 134.6
CLN3-208ENST00000561505 CLIC5Q9NZA1 410 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 USP36Q9P275 1121 aaKnown RBP17.32■□□□□ 0.36
CLN3-208ENST00000561505 DNMT3LQ9UJW3 386 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 LSM7Q9UK45 103 aaKnown RBP17.32■□□□□ 0.36
CLN3-208ENST00000561505 RCOR1Q9UKL0 485 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 KLK13Q9UKR3 277 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 TRAF3IP3Q9Y228 551 aa17.32■□□□□ 0.36
CLN3-208ENST00000561505 NEDD8-MDP1E9PL57 170 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 STC2O76061 302 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 IGLV3-19P01714 112 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 KLKB1P03952 638 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 SYPP08247 313 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 WASP42768 502 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 AFMP43652 599 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 DGKGP49619 791 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 GOLGA8FQ08AF8 430 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 GOLGA8DPQ0D2H9 430 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 ZNF423Q2M1K9 1284 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 HDDC3Q8N4P3 179 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 TRIML1Q8N9V2 468 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 FOXJ1Q92949 421 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 FAXDC2Q96IV6 333 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 HSPA12BQ96MM6 686 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 ITM2CQ9NQX7 267 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 FAM49BQ9NUQ9 324 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 FAM13BQ9NYF5 915 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 WSB2Q9NYS7 404 aaPredicted RBP17.31■□□□□ 0.36
CLN3-208ENST00000561505 SUSD2Q9UGT4 822 aa17.31■□□□□ 0.36
CLN3-208ENST00000561505 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
CLN3-208ENST00000561505 ADAMTS9Q9P2N4 1935 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 A0A1W2PQH9 124 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 CYP26A1O43174 497 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 HLA-DRAP01903 254 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 NR3C1P04150 777 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 MYL1P05976 194 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 RARGP13631 454 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 ATXN3P54252 364 aaPredicted RBP17.3■□□□□ 0.36
CLN3-208ENST00000561505 ORC1Q13415 861 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 FYB2Q5VWT5 728 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 SPOPLQ6IQ16 392 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms