RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PITX1P78337 314 aaPredicted RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 GABPB1Q06547 395 aaPredicted RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 NFE2Q16621 373 aaPredicted RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 VARS2Q5ST30 1063 aaKnown RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 IZUMO3Q5VZ72 239 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 P3H4Q92791 437 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 NTAN1Q96AB6 310 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 TRIM62Q9BVG3 475 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 DHX35Q9H5Z1 703 aaKnown RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 AAASQ9NRG9 546 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 MARCH5Q9NX47 278 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 ANAPC5Q9UJX4 755 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 NAALADL1Q9UQQ1 740 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 FAN1Q9Y2M0 1017 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 M0QYT0 321 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 TNFRSF10BO14763 440 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 CAPN9O14815 690 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 POLR3GO15318 223 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 RBP3P10745 1247 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 ZFXP17010 805 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 FGFR3P22607 806 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 STIP1P31948 543 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 CYP2C18P33260 490 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 SLC11A1P49279 550 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 GATMP50440 423 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 CDR1P51861 262 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 DEUP1Q05D60 604 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 FAM131BQ86XD5 332 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 RELL1Q8IUW5 271 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 GOLGA6L1Q8N7Z2 621 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 ANKLE1Q8NAG6 615 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 UBLCP1Q8WVY7 318 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 ARMC5Q96C12 935 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 CSPG4P5Q96PW8 444 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 KCTD15Q96SI1 283 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 PPP1R12CQ9BZL4 782 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 ADAM7Q9H2U9 754 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 WDR6Q9NNW5 1121 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 OR6C75A6NL08 312 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 SGK1O00141 431 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 F9P00740 461 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 ZSCAN5DPP0CG00 497 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 CYP2F1P24903 491 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 VPS41P49754 854 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 EIF3BP55884 814 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 BCAR1P56945 870 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 SCAPQ12770 1279 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 ELAVL2Q12926 359 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 P3H1Q32P28 736 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 SLC39A12Q504Y0 691 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 PPP6R3Q5H9R7 873 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 FBXO46Q6PJ61 603 aaPredicted RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 VSTM1Q6UX27 236 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 TRMT10CQ7L0Y3 403 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 CTU1Q7Z7A3 348 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 PRUNE1Q86TP1 453 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 PIGVQ9NUD9 493 aa13.42□□□□□ -0.26
SNX1-211ENST00000560829 TPX2Q9ULW0 747 aaKnown RBP13.42□□□□□ -0.26
SNX1-211ENST00000560829 SF3B1O75533 1304 aaKnown RBP eCLIP13.41□□□□□ -0.264e-7■■■■■ 86.2
SNX1-211ENST00000560829 GALTP07902 379 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 OR4Q2P0C623 313 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 NCAM1P13591 858 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 RFC2P35250 354 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 MAGEA11P43364 429 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 GDF10P55107 478 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 ROR1Q01973 937 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 ZNF844Q08AG5 666 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 MORF4L2Q15014 288 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 BSPRYQ5W0U4 402 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 ZNF280DQ6N043 979 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 CNKSR3Q6P9H4 555 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 NPNTQ6UXI9 565 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 CEP128Q6ZU80 1094 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 UNC45BQ8IWX7 931 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 LRRC43Q8N309 656 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 ZCCHC9Q8N567 271 aaKnown RBP13.41□□□□□ -0.26
SNX1-211ENST00000560829 SLC7A14Q8TBB6 771 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 RSAD2Q8WXG1 361 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 ZBTB9Q96C00 473 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 RTP4Q96DX8 246 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 C8orf48Q96LL4 319 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 GPR62Q9BZJ7 368 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 TANC1Q9C0D5 1861 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 SEMA4AQ9H3S1 761 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 CWC15Q9P013 229 aaKnown RBP13.41□□□□□ -0.26
SNX1-211ENST00000560829 VPS18Q9P253 973 aa13.41□□□□□ -0.26
SNX1-211ENST00000560829 BCLAF3A2AJT9 711 aaKnown RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 CFAP69A5D8W1 941 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 TBKBP1A7MCY6 615 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 TBC1D4O60343 1298 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 ETS1P14921 441 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 ADRA1BP35368 520 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 CHKAP35790 457 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 GJA8P48165 433 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 NR2C2P49116 596 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 SLC5A3P53794 718 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 GPS1Q13098 491 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 XRCC4Q13426 336 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 TTMPQ5BVD1 217 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 RNASEH2BQ5TBB1 312 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms