RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SNAI1O95863 264 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 MT-ND3P03897 115 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CCNB1P14635 433 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TPSB2P20231 275 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SSTR1P30872 391 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 FOXN2P32314 431 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 RPA3P35244 121 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 RPL34P49207 117 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 RASSF2P50749 326 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SARNPP82979 210 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 DNAJC3Q13217 504 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TAF5Q15542 800 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TPSAB1Q15661 275 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ZBTB6Q15916 424 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 DPYSL2Q16555 572 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CDO1Q16878 200 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 C15orf59Q2T9L4 293 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SV2CQ496J9 727 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 HP1BP3Q5SSJ5 553 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 MARCH8Q5T0T0 291 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 GJC2Q5T442 439 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 C9orf57Q5W0N0 161 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SCYL2Q6P3W7 929 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 LVRNQ6Q4G3 990 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SLC26A9Q7LBE3 791 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 STRADAQ7RTN6 431 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 GPR142Q7Z601 462 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PLEKHH3Q7Z736 793 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ZC3H18Q86VM9 953 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TTC30AQ86WT1 665 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PSTKQ8IV42 348 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TRIM42Q8IWZ5 723 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PLD5Q8N7P1 536 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ANKRD52Q8NB46 1076 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 MCUQ8NE86 351 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 OR6B3Q8NGW1 331 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PRR7Q8TB68 274 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 DCAKDQ8WVC6 231 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SLC44A1Q8WWI5 657 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 APOPT1Q96IL0 206 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 MAML3Q96JK9 1138 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 HSFY1Q96LI6 401 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 MRPL45Q9BRJ2 306 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SNRNP25Q9BV90 132 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 VPS11Q9H270 941 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ADAMTS10Q9H324 1103 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 RAB6BQ9NRW1 208 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SNTG2Q9NY99 539 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 RCOR3Q9P2K3 495 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CHMP2BQ9UQN3 213 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TEX264Q9Y6I9 313 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CCL15-CCL14A0A0B4J2E2 113 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 SLC15A5A6NIM6 579 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FOXO6A8MYZ6 492 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 KBTBD13C9JR72 458 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CSDE1O75534 798 aaKnown RBP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 KRT37O76014 449 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ATP6V1G2O95670 118 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 F2P00734 622 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FAM163BP0C2L3 166 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 EZRP15311 586 aaKnown RBP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 SMPD1P17405 629 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CYP2F1P24903 491 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ELK3P41970 407 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 RGS7P49802 495 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 PSEN2P49810 448 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 SLC8A3P57103 927 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 YWHAGP61981 247 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FKBP1BP68106 108 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ATP11AP98196 1134 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ADCY1Q08828 1119 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 PTK7Q13308 1070 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CCL15Q16663 113 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FAM110CQ1W6H9 321 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 MSS51Q4VC12 460 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 SLC45A4Q5BKX6 768 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 EFHC1Q5JVL4 640 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FBXO47Q5MNV8 452 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 TTC39BQ5VTQ0 682 aaPredicted RBP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CGB2Q6NT52 195 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 TRNP1Q6NT89 227 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 PMF1Q6P1K2 205 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 C1orf228Q6PIY5 440 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 NPNTQ6UXI9 565 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FAM47EQ6ZV65 393 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CCDC91Q7Z6B0 441 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ACOT1Q86TX2 421 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 PNMA8AQ86V59 439 aaPredicted RBP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CHSY1Q86X52 802 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 HACE1Q8IYU2 909 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 VPS52Q8N1B4 723 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 CRYBG2Q8N1P7 616 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 BANPQ8N9N5 519 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 FBXO41Q8TF61 875 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 MZB1Q8WU39 189 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 MTBPQ96DY7 904 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 TNIP3Q96KP6 325 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 QKIQ96PU8 341 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 LRRC37BQ96QE4 947 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 IQCGQ9H095 443 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms