RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 KRT9P35527 623 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 NBL1P41271 181 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CACNA2D1P54289 1103 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 YWHAGP61981 247 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP3-208ENST00000558285 MYL5Q02045 173 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CSTF1Q05048 431 aaKnown RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 PON2Q15165 354 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 EML3Q32P44 896 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 FILIP1LQ4L180 1135 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 SDE2Q6IQ49 451 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 C11orf74Q86VG3 221 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 GPR161Q8N6U8 529 aaKnown RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 ZMIZ2Q8NF64 920 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 STK32AQ8WU08 396 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 PLD4Q96BZ4 506 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 PNKPQ96T60 521 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 IRX2Q9BZI1 471 aaPredicted RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 SYNCQ9H7C4 482 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP3-208ENST00000558285 ZSCAN32Q9NX65 697 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP3-208ENST00000558285 HBS1LQ9Y450 684 aaKnown RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 NFE2L3Q9Y4A8 694 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 USP3Q9Y6I4 520 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 XIRP2A4UGR9 3374 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 A0A1W2PQH9 124 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 PROB1E7EW31 1015 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CAPN9O14815 690 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CYP26A1O43174 497 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 THAP12O43422 761 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 FOXD2O60548 495 aaPredicted RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 PAPSS2O95340 614 aaPredicted RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 GJA4P35212 333 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TNK2Q07912 1038 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TCF15Q12870 199 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 BYSLQ13895 437 aaKnown RBP9.08□□□□□ -0.96
USP3-208ENST00000558285 ANO4Q32M45 955 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TCP11X2Q5H9J9 407 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TMEM196Q5HYL7 178 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 RAB41Q5JT25 222 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 HTR3DQ70Z44 454 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 UNC45BQ8IWX7 931 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CAMKK1Q8N5S9 505 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TTC8Q8TAM2 541 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 ELMO3Q96BJ8 720 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 TSPY26PQ9H489 355 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 OCEL1Q9H607 264 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 CCSER2Q9H7U1 834 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 ST7Q9NRC1 585 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 MARCH2Q9P0N8 246 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 DLGAP2Q9P1A6 1054 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 BCCIPQ9P287 314 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP3-208ENST00000558285 DEC1Q9P2X7 70 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 SLC12A6Q9UHW9 1150 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 RASAL2Q9UJF2 1139 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 PAXBP1Q9Y5B6 917 aa9.08□□□□□ -0.96
USP3-208ENST00000558285 BECN2A8MW95 431 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 BEST1O76090 585 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 LATS1O95835 1130 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 LMNAP02545 664 aaKnown RBP9.07□□□□□ -0.96
USP3-208ENST00000558285 SP9P0CG40 484 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 CHRNB1P11230 501 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 ARSAP15289 507 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 DESP17661 470 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 HOXA6P31267 233 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 GRIA2P42262 883 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 MRPS21P82921 87 aaKnown RBP9.07□□□□□ -0.96
USP3-208ENST00000558285 ADIGQ0VDE8 80 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 MTAPQ13126 283 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 DHCR24Q15392 516 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 TERF2Q15554 542 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 ARHGAP44Q17R89 818 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 NUGGCQ68CJ6 796 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 TRIM68Q6AZZ1 485 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 PM20D1Q6GTS8 502 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 RBM43Q6ZSC3 357 aaKnown RBP9.07□□□□□ -0.96
USP3-208ENST00000558285 TOGARAM2Q6ZUX3 1019 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 MIB1Q86YT6 1006 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 UCMAQ8WVF2 138 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 SLC22A12Q96S37 553 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 HINFPQ9BQA5 517 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 CRACR2AQ9BSW2 395 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 RNF38Q9H0F5 515 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 HPS4Q9NQG7 708 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 PRMT8Q9NR22 394 aaPredicted RBP9.07□□□□□ -0.96
USP3-208ENST00000558285 CNTN6Q9UQ52 1028 aa9.07□□□□□ -0.96
USP3-208ENST00000558285 CCDC163A0A0D9SF12 145 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 VGLL3A8MV65 326 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 CHURC1-FNTBB4DL54 471 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 HHLA1C9JL84 531 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 NPC1O15118 1278 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 HOXC11O43248 304 aaPredicted RBP9.06□□□□□ -0.96
USP3-208ENST00000558285 IRF1P10914 325 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SLC2A3P11169 496 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 LCP1P13796 627 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 PON1P27169 355 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 GBP1P32455 592 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 TNFRSF4P43489 277 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SOX9P48436 509 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SLC11A2P49281 568 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms